miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


5 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
165Arabidopsis thalianaTTGGACTGAAGGGAGCTCCCTalignmentplotGSM278335-4060AT4G18390.1 cdna:known chromosome:TAIR10:4:10162953:10165562:-1 gene:AT4G18390 transcript:AT4G18390.1213870.0152.53
5'     TTGGACTGAAGGGAGCTCCCT        3'
       |||||||||||||  | ||||
3' ACTTAACCTGACTTCCCAGG-GGGACAACTTT 5'
209Arabidopsis thalianaTTGGACTGAAGGGAGCTCCCTalignmentplotGSM278335-4060AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2214870.03268.666673.5
5'     TTGGACTGAAGGGAGCTCCCT        3'
       o|||||||||||| o|o|| |
3' CATTGACCTGACTTCCCCTGGGG-AGACTCTT 5'
229Arabidopsis thalianaTTGGACTGAAGGGAGCTCCCTalignmentplotGSM278335-4060AT1G30210.1 cdna:known chromosome:TAIR10:1:10627185:10630538:-1 gene:AT1G30210 transcript:AT1G30210.1211420423
5'     TTGGACTGAAGGGAGCTCCCT        3'
       |||||||||||||  | ||||
3' ACTTAACCTGACTTCCCAGG-GGGATGATGAC 5'
402Arabidopsis thalianaTTGGACTGAAGGGAGCTCCCTalignmentplotGSM278370-4061AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2214870.011243.5
5'     TTGGACTGAAGGGAGCTCCCT        3'
       o|||||||||||| o|o|| |
3' CATTGACCTGACTTCCCCTGGGG-AGACTCTT 5'
468Arabidopsis thalianaTTGGACTGAAGGGAGCTCCCTalignmentplotGSM278370-4061AT1G53230.1 cdna:known chromosome:TAIR10:1:19849788:19851725:-1 gene:AT1G53230 transcript:AT1G53230.1211950.05444
5'     TTGGACTGAAGGGAGCTCCCT        3'
        |||||||||||| o|o|| |
3' CAATTACCTGACTTCCCCTGGGG-AGACACTA 5'
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