miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


6 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1513Solanum lycopersicumTTGGATTGAAGGGAGCTCTalignmentplotGSM553688-9229Solyc06g074300.2.1 cdna:novel chromosome:SL2.40:6:42312797:42316469:-1 gene:Solyc06g074300.2 transcript:Solyc06g074300.2.125030.0312122.5
5'     TTGGATTGAAGGGAGCTCT          3'
       ||||||| |||o|| ||||
3' TTGGAACCTAAGTTCTCT-GAGAACCACCCTT 5'
1559Solanum lycopersicumTTGGATTGAAGGGAGCTCTalignmentplotGSM553689-9230Solyc05g012840.1.1 cdna:novel chromosome:SL2.40:5:5987496:5988167:-1 gene:Solyc05g012840.1 transcript:Solyc05g012840.1.106260.03843.5
5'     TTGGATTGAAGGGAGCTCT          3'
       o||||o||||||| | ||o
3' CTTTGACCTGACTTCCC-CAAGGGATACTCTT 5'
1560Solanum lycopersicumTTGGATTGAAGGGAGCTCTalignmentplotGSM553689-9230Solyc02g077250.2.1 cdna:known chromosome:SL2.40:2:36822112:36823838:-1 gene:Solyc02g077250.2 transcript:Solyc02g077250.2.109080.02843.5
5'     TTGGATTGAAGGGAGCTCT          3'
       o||||o||||||| | ||o
3' CTTTGACCTGACTTCCC-CAAGGGACACTCTT 5'
1583Solanum lycopersicumTTGGATTGAAGGGAGCTCTalignmentplotGSM553689-9230Solyc08g048390.1.1 cdna:known chromosome:SL2.40:8:39810608:39811771:1 gene:Solyc08g048390.1 transcript:Solyc08g048390.1.1010250.0422223.5
5'     TTGGATTGAAGGGAGCTCT          3'
       |||||o|||||||  |o|o
3' TCTTAACCTGACTTCCCAGGGGGATAACTTTG 5'
1612Solanum lycopersicumTTGGATTGAAGGGAGCTCTalignmentplotGSM553690-9231Solyc05g012840.1.1 cdna:novel chromosome:SL2.40:5:5987496:5988167:-1 gene:Solyc05g012840.1 transcript:Solyc05g012840.1.116260.02423.5
5'     TTGGATTGAAGGGAGCTCT          3'
       o||||o||||||| | ||o
3' CTTTGACCTGACTTCCC-CAAGGGATACTCTT 5'
1615Solanum lycopersicumTTGGATTGAAGGGAGCTCTalignmentplotGSM553690-9231Solyc02g077250.2.1 cdna:known chromosome:SL2.40:2:36822112:36823838:-1 gene:Solyc02g077250.2 transcript:Solyc02g077250.2.119080.02423.5
5'     TTGGATTGAAGGGAGCTCT          3'
       o||||o||||||| | ||o
3' CTTTGACCTGACTTCCC-CAAGGGACACTCTT 5'
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