miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


11 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1484Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553688-9229Solyc06g073640.2.1 cdna:known chromosome:SL2.40:6:41820787:41825280:-1 gene:Solyc06g073640.2 transcript:Solyc06g073640.2.10105401161161
5'     TTTGGATTGAAGGGAGCTC          3'
       |||||| ||||||||||||
3' CATGAAACCTCACTTCCCTCGAGCTCGAAGAA 5'
1506Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553688-9229Solyc12g014120.1.1 cdna:known chromosome:SL2.40:12:4931940:4933799:-1 gene:Solyc12g014120.1 transcript:Solyc12g014120.1.124720.0313132
5'     TTTGGATTGAAGGGAGCTC          3'
       ||||| |||||||| ||||
3' ATTAAAACCAAACTTCCCCCGAGGTAGACTAT 5'
1531Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553688-9229Solyc01g009070.2.1 cdna:known chromosome:SL2.40:1:3075589:3080069:-1 gene:Solyc01g009070.2 transcript:Solyc01g009070.2.12967026261
5'     TTTGGATTGAAGGGAGCTC          3'
       |||||| ||||||||||||
3' ACCAAAACCTCACTTCCCTCGAGGTCGAAGTA 5'
1534Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553688-9229Solyc06g008320.2.1 cdna:novel chromosome:SL2.40:6:2193612:2201004:-1 gene:Solyc06g008320.2 transcript:Solyc06g008320.2.1215290662
5'     TTTGGATTGAAGGGAGCTC          3'
       ||o||||||||o|o|o|||
3' ATGAAAGCCTAACTTTCTTTGAGCTTCGAGGC 5'
1535Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553689-9230Solyc06g073640.2.1 cdna:known chromosome:SL2.40:6:41820787:41825280:-1 gene:Solyc06g073640.2 transcript:Solyc06g073640.2.10105401221221
5'     TTTGGATTGAAGGGAGCTC          3'
       |||||| ||||||||||||
3' CATGAAACCTCACTTCCCTCGAGCTCGAAGAA 5'
1549Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553689-9230Solyc12g014120.1.1 cdna:known chromosome:SL2.40:12:4931940:4933799:-1 gene:Solyc12g014120.1 transcript:Solyc12g014120.1.124720.01772
5'     TTTGGATTGAAGGGAGCTC          3'
       ||||| |||||||| ||||
3' ATTAAAACCAAACTTCCCCCGAGGTAGACTAT 5'
1586Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553689-9230Solyc01g009070.2.1 cdna:known chromosome:SL2.40:1:3075589:3080069:-1 gene:Solyc01g009070.2 transcript:Solyc01g009070.2.129670441
5'     TTTGGATTGAAGGGAGCTC          3'
       |||||| ||||||||||||
3' ACCAAAACCTCACTTCCCTCGAGGTCGAAGTA 5'
1587Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553689-9230Solyc10g019260.1.1 cdna:novel chromosome:SL2.40:10:12672810:12674303:1 gene:Solyc10g019260.1 transcript:Solyc10g019260.1.121500991.5
5'     TTTGGATTGAAGGGAGCTC          3'
       |||||||o||| |||||||
3' CCGGAAACCTAGCTTACCTCGAGGTTAGAGAA 5'
1599Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553690-9231Solyc06g073640.2.1 cdna:known chromosome:SL2.40:6:41820787:41825280:-1 gene:Solyc06g073640.2 transcript:Solyc06g073640.2.1210540441
5'     TTTGGATTGAAGGGAGCTC          3'
       |||||| ||||||||||||
3' CATGAAACCTCACTTCCCTCGAGCTCGAAGAA 5'
1609Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553690-9231Solyc12g014120.1.1 cdna:known chromosome:SL2.40:12:4931940:4933799:-1 gene:Solyc12g014120.1 transcript:Solyc12g014120.1.124720.03442
5'     TTTGGATTGAAGGGAGCTC          3'
       ||||| |||||||| ||||
3' ATTAAAACCAAACTTCCCCCGAGGTAGACTAT 5'
1618Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553690-9231Solyc01g009070.2.1 cdna:known chromosome:SL2.40:1:3075589:3080069:-1 gene:Solyc01g009070.2 transcript:Solyc01g009070.2.10967010101
5'     TTTGGATTGAAGGGAGCTC          3'
       |||||| ||||||||||||
3' ACCAAAACCTCACTTCCCTCGAGGTCGAAGTA 5'
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