miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


15 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
896Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6111130202.857142.5
5'     TTTGGGACGGAGGGAGTACTG        3'
       ||| ||||||||o|||||||
3' CATAAAAGCCTGCCTCTCTCATGAGAGAATAG 5'
901Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_53316.1 cdna:known chromosome:030312v2:1:416027895:416032751:1 gene:MLOC_53316 transcript:MLOC_53316.123455080.8888891
5'     TTTGGGACGGAGGGAGTACTG        3'
       ||||||||||||o|||||||o
3' AATAAAACCCTGCCTCTCTCATGATTAAATCA 5'
923Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_55628.1 cdna:novel chromosome:030312v2:6:459158255:459167089:-1 gene:MLOC_55628 transcript:MLOC_55628.1241380.01617.6252.5
5'     TTTGGGACGGAGGGAGTACTG        3'
       || ||o||||| |||||||||
3' TATAAATCCTTGCCTACCTCATGACCTGTGCC 5'
985Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_69670.1 cdna:known chromosome:030312v2:7HS:11964591:11968606:-1 gene:MLOC_69670 transcript:MLOC_69670.1216360842
5'     TTTGGGACGGAGGGAGTACTG        3'
       |||||o|||||||||||| |o
3' AATAAAACCTTGCCTCCCTCAT-ATTATTAAA 5'
1001Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_22135.1 cdna:novel chromosome:030312v2:5:525347519:525349048:-1 gene:MLOC_22135 transcript:MLOC_22135.1214070.03843
5'     TTTGGGACGGAGGGAGTACTG        3'
       |||||o||||||o|||o| |o
3' AATAAAACCTTGCCTCTCTCGTCATGTAATAT 5'
1008Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_13576.3 cdna:novel chromosome:030312v2:2:432768357:432771331:1 gene:MLOC_13576 transcript:MLOC_13576.3222840.05617.6253.5
5'     TTTGGGACGGAGGGAGTACTG        3'
       || ||o||||| |||||| ||
3' TATAAATCCTTGCCTACCTCAT-ACTCAGATG 5'
1009Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_53358.5 cdna:known chromosome:030312v2:1:271628792:271630780:-1 gene:MLOC_53358 transcript:MLOC_53358.5217820617.6252.5
5'     TTTGGGACGGAGGGAGTA-CTG       3'
       || ||o|||||||||||| |||
3' TATAAATCCTTGCCTCCCTCATAGACTATCCT 5'
1013Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_37946.5 cdna:novel chromosome:030312v2:5:188989229:188992900:1 gene:MLOC_37946 transcript:MLOC_37946.521880.01822.5
5'     TTTGGGACGGAGGGAGTACTG        3'
       ||||||||o||||||||| |
3' AATAAAACCCTGTCTCCCTCATAAACAGATCA 5'
1016Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_78409.3 cdna:novel chromosome:030312v2:5:560101869:560105791:1 gene:MLOC_78409 transcript:MLOC_78409.3224640822
5'     TTTGGGACGGAGGGAGTACTG        3'
       ||||||||o||||||||| |o
3' AATAAAACCCTGTCTCCCTCATCATTATTTAT 5'
1023Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6211130202.857142.5
5'     TTTGGGACGGAGGGAGTACTG        3'
       ||| ||||||||o|||||||
3' CATAAAAGCCTGCCTCTCTCATGAGAGAATAG 5'
1046Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52823.1 cdna:novel chromosome:030312v2:3:333972822:333974303:-1 gene:MLOC_52823 transcript:MLOC_52823.128700.05993
5'     TTTGGGACGGAGGGAGTACTG        3'
       ||||||||o| |o|||| |||
3' AGTTAAACCCTGTCCCTCTCA-GACTACCACT 5'
1051Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_71605.1 cdna:novel chromosome:030312v2:6:536383101:536385272:-1 gene:MLOC_71605 transcript:MLOC_71605.1019260.0391.1254
5'    TTTGGG-ACGGAGGGAGTACTG        3'
      |||o|| ||o||||||||||
3' CATAAATCCATGTCTCCCTCATGTATCATACT 5'
1072Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_4425.8 cdna:novel chromosome:030312v2:6:244732157:244735974:1 gene:MLOC_4425 transcript:MLOC_4425.8211390.0391.285713
5'     TTTGGGACGGAGGGAGTACTG        3'
       || || |||||||||||| ||
3' AATAAATCCATGCCTCCCTCAT-ACTCTATTA 5'
1100Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1213760.01221.5
5'     TTTGGGACGGAGGGAGTACTG        3'
       |||||||||||||||||| |o
3' AATAAAACCCTGCCTCCCTCAT-ATTGTATCC 5'
1144Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.121797010101
5'     TTTGGGACGGAGGGAGTACTG        3'
       |||o||||||||||||||||o
3' AATAAAATCCTGCCTCCCTCATGATGCTTTCT 5'
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