mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCCACCGCAGCCGCTGCCGCA CGGCCGTGGCCGTGGAGGCCG TGGACGTGGTCGCGGTCGCGGCCGTGGCCGTGGAGGCCGCACCGCCCGCGCTGGCCGTGAGGGTGCTGAGAAGAAGGAGGGCGAAACTACTGAGGCTGTTGCTGCCACCGATGACGCTGCCACCGCAGCCGCTGCCGCACCTGCCACCACTGAGACCT TGGACGTGGTCGCGGTCGCGGCCGTGGCCGTGGAGGCCGCACCGCCCGCGCTGGCCGTGAGGGTGCTGAGAAGAAGGAGGGCGAAACTACTGAGGCTGTTGCTGCCACCGATGACGCTGCCACCGCAGCCGCTGCCGCACCTGCCACCACTGAGACCTCCAAGACCCAAGCTCGCCCCCAGCGTGAGCGCCGTGAGCGTGGTCCCCCCGCTGATGGAATTCCTTCCAAGACCAAGGTCATGGTTGCTAACCTGCCTTACGACCTGACCGAGGACAAGCTTGTTGAGCTTTTCAAGGCTTACGAGCCCTCTTCTGCCAAGATTGCTCTCCGACCTATTCCCCGATTCATGATCAAGAAGCTTCAGGCTCGTGGCGAGGCCCGCAAGGGTCGTGGCTTCGGTTTCGTTACTCTAGCTTCTGAGGAGCTTCAACAGAAGGCTGTTACTGAGATGAACGGAAAGGAGATTGAGGGCCGTGAGATTGCCGTCAAGGTTGCTATTGACAGCCCTGATAAGACCGACGAGGAACAGCACGAGGGTGATGCTACCAACGGCCAGAAGGAGAACATTCCCACCACTGAAGCTGCCCCTGTGGCTGCCCCTGCTACTGGCGCCGCGGCTGCAGCCACTGCTGCCACCAAAGCTGCCGAGGCCACTCCTGCCTCTACCACTCCCGCCACTACTGCCTAAGTAAGGCACGGCGCGAGTTCACCGACATGAACCTCTACTATGTCATGATGATTACTTTACGATTTGGGCATGCGATTTCACGATTTCTCTTCCGTAGTATCTCCTTCACGATTAAAAAAGGATGAAGGTTTCACCTTCCTGATTTTTTCTGGGGGACTAGGCAAACCAATCAACTTGTTGATCTGG 4 0 3' arm Hordeum_vulgare mirnest 100 100 -60.2 .....(((((.((((..(((((.(((((.((((.(((.((..(((((.(((.....))).)))))((....))..((..((((.(((..........)))..)))).))......)).))).)))).))))).)))))..)))).)))))........ (-60.2)