mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCCGTCCCAAAATAAGTAA ACTTACTTTGAGATGGAGGGA ACCAATCGAGTACTTCCTCCGTCCCAAAATAAGTAACTCAAAAATGACTCAAGAGAAGAGTCATTTGTGAGTTACTTACTTTGAGATGGAGGGAGTAGAACACAAT TAAACCCTATGCCCACAGCCTGCTGCATGCACGCAGCAAGACTCGCCAGAGAGAGATCCTATAGGTTGCAGTCCTGACCAATGCTGGAAATGATACCAATCGAGTACTTCCTCCGTCCCAAAATAAGTAACTCAAAAATGACTCAAGAGAAGAGTCATTTGTGAGTTACTTACTTTGAGATGGAGGGAGTAGAACACAATTCTACCAGATGCCGCGTTGTGCTAAAATATGCAAGGCTTGATCGGTCACGCGGAAGCTGTTACACACTGAACAAAAGGAGACCATGCAGAAACAAATGAAGGACAACCAAAAGGCAGCAGCTAACTGCGGAGGATGCAGATAAACTGTCCAGTGATCTGCCTTCGTGGAAAACATCACGTAGATGAATCGATTTCCACTGCTGGAGCGCGCTCGCCAACTTCTAGGAAGAACGTAGAGTCCCTCCATGGCTCACTACTTCAAATCTGCCGGGTGTTGTATGACTTGCAACTATGGCACTTATGTGCAATTAAGTGGAACTGCACCTCTGATACCGCCCCGCAATCATTGCACAATATGCGAACCATCTTATCGTCGAAGGAGTTTGACAGAGTCGCTAGTTCTGCATCCAGTCTTTCCCATGCCTTTGACATGTCACACACCGACTTGGAGCAGAGCGGGCATGCGAATTGGCAATGCTCCTTCA 2 0 5' arm Hordeum_vulgare mirnest MIR1122 0.0000000001 100 -48.9 ..........(((((((((((((.((((.(((((((((((.(((((((((.......))))))))).))))))))))).)))).)))))))))))))......... (-48.9)