mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTCCCATAATG TTCTGGGACGAATGGAGTAGC TCATTATCATATACTCCCTCCGTCCCATAATGTAAGACGTTTTTTGACACACATTCTGGGACGAATGGAGTAGCTAATATAT GCTCGAGCGGCCGCTATCATGCAACCCAAATCATACAGGTCTAAATGATCATGAAGCAATAGGCCTAGTAACAGTAGATCCTAGTTAAAGCACAACATTCTGTGGTGGGCAATGTACTATGAAATGCAAACCATTACAAGGTGAGCAATGTAACAGAGATGATTATGATGCTGATTTTGTAAGAGACCAAGTATTATGGAATTCCGGTAAGTACGGAGTAAAGACATCTTATTAGTTTGATGGTCAATGCACTTTTTGTACATAACTTATGTATCAATAGAATTATCACCTACCGATTACATGAATTGATCCCATATTTCCTAATAACAATTATGTGGTCATAATGAACTGAAACCAATAGCATAAGAAATACAGGTAATTACCTACTACATGATATCCTATTTAAGCATATTAAAATCATTTAAGTATCAACTTCATAGTAGAATGACAAACTTCATATTGCCAAGTCAATCATTATCATATACTCCCTCCGTCCCATAATGTAAGACGTTTTTTGACACACATTCTGGGACGAATGGAGTAGCTAATATATGTTTGT 4 0 5' arm Hordeum_vulgare mirnest MIR1122 0.00000000000002 tae-MIR1130 0.00000002 -22.3 ...........((((((...(((((((.(((((.................))))).)))))))...)))))).......... (-22.3)