mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTCCCAAAGTG TTTTGGGATGGAGGGAGTAAT AGCCTCACAAATACTCCCTCCGTCCCAAAGTGACTCAAACTTGGTACAACTTTAACACTTATTTTGGGATGGAGGGAGTAATTCATACAT ATTAAAGGCCAGATTTCTGGACTTGACTAAGTACTGCTGGTGTTATTGCTACACTACATCTCATGAAACAAGTATTGAGCATGTAGCACGTACATGCATGATGATACTTGTCACCTACTTCTCCCTAGACAGTTAGCACTGATATATCTAGAACTAAGCCTCACAAATACTCCCTCCGTCCCAAAGTGACTCAAACTTGGTACAACTTTAACACTTATTTTGGGATGGAGGGAGTAATTCATACATCAACCCAATACCAAATGTCAAGGGATTCATTTCATAGATCATATATCCAAGCAACCACATTATAAGACTCGCCGATACTTTTTAGTTTGCTCAGTCTGTCGTCTGCTAGACACTACTCGATCATCCAGTTACAGGGCGACACTAGAAAAACTATCTAGCAGGTAGTTAAAAAGATGAGGATCCCTGGAATAAACTTGCTATGTCCATTGTCCAGTAGTCAACCTATTCAACAAAAGCAAATAAAGAAGGCAAAAAAGGCATCAAGTTTATAACTACAAAACTGACATGGTTGCACACTATTGTAACTTATTAACAGTGAACAAAATCCTATCAAGAATCTAGTCCAATGGACAATGGAATAGGCTATATGGCACAAAAACATATCTCGACATCTATCAAGACTGGGTTTCTGGACATGGATAAGTATTTCTGGTGTTCACTCTAACCAAGTCCACAGCATAAATCCTTACCTCTTCTACACACAAAGGAGCTTTTAAAGTCAGC 0 0 5' arm Hordeum_vulgare mirnest MIR1122 0.000001 tae-MIR1122 0.00007 -33.8 ...........((((((((((((((((((((((.........(((...))).......)))))))))))))))))))))).......... (-33.8)