mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTTCCAAAATA TTTTGGGACGGAGGGAGTACT CTACTCTATTATACTCCCTCCGTTCCAAAATAAGTGACTCAAGCTTAGTACAACTTTGTACTAGAGCTAGTACAAAGTTGTGACACTTATTTTGGGACGGAGGGAGTACTACTCTACG GAACATATCTATCCCCATTTTTTTGTCTCTGTTTCGGAAAGACTATCCCTGGCCAATTCTACTCTATTATACTCCCTCCGTTCCAAAATAAGTGACTCAAGCTTAGTACAACTTTGTACTAGAGCTAGTACAAAGTTGTGACACTTATTTTGGGACGGAGGGAGTACTACTCTACGTACAGTGGGTTTGTATCATGCAAGCATCAATCCACATCCACAAATTAACCCACGCTGCGTGTATGTATGATTGTTTTCCTCGTGATTCTTCCTTGGTGGTGCAGCCGGCTGGATTTGATGAAAACCGACCCGGCCATGAAGCCCAGGAATCTGCTAGGTAGATAGTGTTAGTTTCAGACTTTCCACAGTGAGTCATGAGGAGGAAGACTGGGCCTCGTGCCGAATTCGGCACGAGGCTTTTTCTTGGCCATACCGTGTTTATGCTGTAACTCTAGAATTTGTGACACAGACACCTGTCCTATATATTTTGAGGTGGTTAGCTCGAGGACCTGATCTAGTGCAAGTTTCTCTTGAATGATCACTTCATCATT 0 0 5' arm Hordeum_vulgare mirnest MIR1122 4e-35 osa-MIR1862c 0.000006 -55.1 ...........(((((((((((((((((((((((((............(((((((((((((((....))))))))))))))).))))))))))))))))))))))))).......... (-55.1)