mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATCTGTAAACAAATATAAGGC CTTATATTTGTTTACGAGCG CTTACTGGTAGTTGCTACTCCATCTGTAAACAAATATAAGGCGTTCTAAGTGATCTGAAACGTCTTATATTTGTTTACGAGCGGAGGCAGCAATATGCTCA ACAACATAAATCCAAGGTTTGCTTTGCTTACTGGTAGTTGCTACTCCATCTGTAAACAAATATAAGGCGTTCTAAGTGATCTGAAACGTCTTATATTTGTTTACGAGCGGAGGCAGCAATATGCTCATCTACTACAGGAGACACATACGCACAACACAACTGTCTTCATAGTGCCTATTGCCTAATAGGTCCTAACAAGTGCCCAATGACTGATAACAGAGAACGCAGGTGACTCGAGTAACATTTGGGCACCGATAAAGTCTGAGAATGCATGCTTGATCTGGCAAATGACTTCCTCTACAGTACAACTTCCTTCACCTTGCCGTTCACCACAAGCTTGCACAGCCCATTGAACACATCAGCATCAAAGTCTTCACCAAAATCTTTGGAACTTTCAGCAGTGATGGACTGGTCGTTGTCAGCAATCCCAATAACCTCTAGATAATTTGACATAAGGCCTTCCGTGGCACCTCTGATGGTCAACTGATGTCCATCAGTCGACTGCCCAACAAGAAGTCCACCTTGAGTGTGCTGGACTTTAAGTACTGTGCGCACTCTTTGCCCAACAAACATCTTGAGGGTCTCTCCATTAACGATTGCTGAACGAAATGACGCATCACTGTCCATGTCGAGAGAGGAGATGGGATGAGCCTCGATCAATCTATCTACTCCTGCGCACCCTACCCCAG 1 1 5' arm Hordeum_vulgare mirnest MIR1122 0.0003 100 -36.6 ......((((((((((.((((.((.((((((((((((((((((((.((.......)).))))))))))))))))))))))..))))..)))))).)))).. (-36.6)