mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTCTTCATCATCATCATCA ATGGTGATGGAAGAAACTC ATTCATTCAGCTTTTCTTCATCATCATCATCATCAATGGTGATGGAAGAAACTCCTCCTCCC TTTTTTTTTTTTTTTTTTTTTTTTTTGCACTACCAACAAACAGAACCTAAATCAAATACAAACGTTACTATCACAACAACAAGAATTATGCTGAAAACAAGTTCCTTTTTTTATTGCAAACAATGACACCCATTTCCCTCTTATATAACAATAAGTGCTTAATTTCACCGTTTTGTTTGTTACATTAAAGCAACTAAGCTTCCTTTTAATTTTTCTCTTTACTTCCTCTGTTTTTAAGCTCCTCTGTTTTTTCATGGTGAAGAAGATTATGAGGTCTGATCCAAAGCAATTTTCAACAATGCAAAATCAGAACAATTTTTGTGTTAAAATTGCAGTGTCATTCCTCTGTTTAGGCCTTGCTTTTCGGCTTCTATTGTCGGATTCATTCAGCTTTTCTTCATCATCATCATCATCAATGGTGATGGAAGAAACTCCTCCTCCCATGGCAGAGGAAAAAACAGAGAAGAAAACAGAGTCCCCTGTTTTTCATCTTCCTCTTGAAGCATCATCTGATTCTGTTGATTTTTCATCAAACAACAACAACAAAAGCCAAAGCTCTCAAAATGGTAAGAGTTTTTGTTTTTTTGTTTATTTTTTGTGATCTTCTTGTTCATTAGTTGGAAACATGCATGAATTTCCAAAGCTTTCTAAACCATCTTTAAGGTTTGTTTTGGAAGAGGATCTTCTAGTGTTTGATGATCCGTTCTCACATAAAAACTTCAGATAAAAAAAAA 3 2 5' arm Arachis_hypogaea mirnest 100 100 -14.8 ............(((((((..(((((((((.....))))))))))))))))........... (-14.8)