mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCGTTGAGTGCAGCGTTGATG CCGGCGCTGCACGCAATGACG GGAGGAAGAGCCGCAGAGGTGCCGTTGAGTGCAGCGTTGATGAACCGTCCGGCCATGGCCCGTCCGCCTCCACCGAGGCCGGAGCGGTTCACCGGCGCTGCACGCAATGACGCCTCTGCTTTCTCCGGCG AGAGTAGTACGATCTGTAGTACAACAAACGTTGGTCAGTTCTCCACTGCAGTACAACCGGCGTCGTCGCCAAGCTTACTAGTCAGTACAAATAATGGGGATCTCCCGGTTTCAAAAGCTAAGCCATGATTCCTGCTTGCGTCTACGGAAGCTATCCTACTGGGCAAGACGAAGAGGAGGAAGAGCCGCAGAGGTGCCGTTGAGTGCAGCGTTGATGAACCGTCCGGCCATGGCCCGTCCGCCTCCACCGAGGCCGGAGCGGTTCACCGGCGCTGCACGCAATGACGCCTCTGCTTTCTCCGGCGAACCAATCAGCCTTCCGTTCCGTTCCTCTTGCCAACACCATTGACACACAAAGGCGTTCATCAGCTACTGTACTTCTGTAGGCTCATGTGGTGCCGATGGAGGCATGAGGCGGTGAAAAGGAGCTCAGTTGGGCCCCCAGCAGACGAGGTGGTGTGCCTTGCGCAGCTTCGTGT 3 0 5' arm Hordeum_vulgare mirnest MIR397 0.0005 hvu-MIR397 1e-59 -72 (((((((.....(((((((((.(((((.(((((((((((.((((((((((((((.(((..............))).))))))).))))))).))))))))))).))))).)))))))))))))))).... (-72)