mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATACTCCCTTCGTCCGAAAAT TTCCGGACGGAGGAAGTATAT TTCGCCATGTTATACTCCCTTCGTCCGAAAATACTTGTCCTAGAAATGAACATAATGAATGTATATATAACTAAAATAAATCTAGATACATTCATCTCTAAAACAAGTATTTCCGGATGGAGGAAGGACAAGTATTTCCGGACGGAGGAAGTATATGATATACA GGACGAAAGTATAAAGATTCTAGGCCATCTTCGCCATGTTATACTCCCTTCGTCCGAAAATACTTGTCCTAGAAATGAACATAATGAATGTATATATAACTAAAATAAATCTAGATACATTCATCTCTAAAACAAGTATTTCCGGATGGAGGAAGGACAAGTATTTCCGGACGGAGGAAGTATATGATATACAATGAAATAAAGCATTTGACGAAAGTATACAGGATTCTGGGCCATCTTCTCCACCTTATATATGATATACAACGAAAAACAGACTAACAAACGTGTACAGTCATTTAGCTCCACTACCGGGAAACACCATGGGAATACAGATATCCAGGTTAGGCCACCAAGGCCTATTCTCAGCGCTGTAAAGATATCAGGGTTCAGTGAGGTCATAATGCTTGATGTTAGCATTGCAATTTGCATCATTCAGATCTTTGTAAGGAGCTACCGGTGGGGTGCAGCCACTATAAGCATTTTCTATCTCTTACGTTTTCATAACTAATAAAAGCATTTCACCATTTCAAATTCCCATATATTTAATCCTTGGGAAGTGTGAGATCATCTGCAGAAGCTGCCCTTTTGCCATTATAACGCTGTTTCCCAAAGGTGAATGGAACATATCTGTATTTCACCATATGAAGGAT 2 0 5' arm Hordeum_vulgare mirnest MIR1122 5e-29 tae-MIR1128 0.000002 -47 ..........((((((.((((((((((.(((((((((((((...((((......((((((((((.....................))))))))))............))))(((.......)))))))))))))))).)))))))))).))))))......... (-47)