mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATATTATGGGACGGAGGGAGG TCCCTCCATCCCATAATATAA TGATAGCATATACTCCCTCCATCCCATAATATAAAAGCGCTAGCGTTTTTTACACTACGCTCTTATATTATGGGACGGAGGGAGGAGTATAGAAC ATGCAATATATACATTTATTCTCCCAAGAGAAAGAGCAACACAAGTAGACTGCTCCAGTACTTATTCGCACACTCAATATATAAAATGATAAAAATCAAATATTCTGTACTGAGAATGGTTTCACCCTTAGGGAATTATTTCCACAAAAGAGAAGATGAGTGAATGAACTAAGGAAATGCGTAATCTAAGTCCATCAACGGAATAACATCTTGATCTTTCAGATCATCTGTCCATGGTCTGAATTGGTCCTCGTGTGCACTATTCTGATAAGAAAAAAAAAGAGTGTAAACTTCACAGTTTGCAAATATCTTCATGCTACCAAGGTACGTATATGATAGCATATACTCCCTCCATCCCATAATATAAAAGCGCTAGCGTTTTTTACACTACGCTCTTATATTATGGGACGGAGGGAGGAGTATAGAACAAGCATGCGATTAAGATGGTGTATACACCTAATGCTGCAAACCACAGATTTCGTTATTGTCTCGTCCTCTGGCTCACGAATTATTCGTAAGCCAGAGGACGAGACAAAGCGGACGAAGAAAGAAAGGAATTTGTTGCTTCTCTTCACAAGCGG 2 0 3' arm Hordeum_vulgare mirnest MIR1122 3e-41 tae-MIR1120 0.000001 -40.6 .......((((.((((((((.(((((((((((((.((((.(((.((.....)).))))))).))))))))))))).))))))))..))))..... (-40.6)