mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTCCCGAAATA TTTCCGGACGGAAGGAGTACT ATGCTGAGTGACTACATGTACTACTCCCTCCGTCCCGAAATACTTGTCCTAGAAATGAATGTATCTAGACTTATTTTAGTTATAGATACAACCATTTTATTCATTTCTAAGACAAGTATTTCCGGACGGAAGGAGTACTACTTTTGGTCTTCTTGTT ATTTTTTCCAGGTATCTAAGTATGTAAATTTCATGATTTTTACATGTAAAAGTTTCACATGGCACCTTGAACCCCTAAACACCCATGGTTTTACATAAGCTTATTTGACAAGCTCTGCTACAGATCCAAGNCCCGCATAAGCCTGTTATTGCGATGCTGAGTGACTACATGTACTACTCCCTCCGTCCCGAAATACTTGTCCTAGAAATGAATGTATCTAGACTTATTTTAGTTATAGATACAACCATTTTATTCATTTCTAAGACAAGTATTTCCGGACGGAAGGAGTACTACTTTTGGTCTTCTTGTTTTCTTCCACTGATATACAAAGTACATACACAACTTCATTTCTTTGCTCAACAGCCGCACAGAAATGTTTACAGAGATGACTTGGGTTTAACCGATGAAGAGCTTCTCCCATAAGAGTATACACCTAGTCCGCGCTTCTTTCCAAGTCGTCCGGCATCGACATATTGGACAAGAAGAGGGCAAGGGCTGTATTTGTTATCTCCTAGTCCGTTGTGGAGCACCCTGAGTACTGAAAGGCAAACATCTAAGCCTATGAAGTCAGCAAGCTGCAGAGGGCCCATTGGATGATTCGTGCCGAGCTTCATCCCTGTATCGATGTCATCTTTGGTTGCCACCCCCGTGTAAAGTGTCCAAAATGCTTCATTAATCATCGGCATTAGGATGCGG 2 0 5' arm Hordeum_vulgare mirnest MIR1122 3e-39 tae-MIR1135 0.0000000000005 -66 .....(((.(((((...(((.((((((.(((((((.((((((((((((.((((((((((((((((((((((......)))).)))))))).........)))))))))).)))))))))))).))))))).)))))).)))...)))))..)))... (-66)