mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTTCTTTACGGAGGGAGTA CTCCCTCCATAAAGAAATAGA AGTAACTTTGTACTCCCTCCATAAAGAAATAGAAGAGCGTTTAGATCACCAAAAGTAGTCATCTAAACGCCCTTATATTTCTTTACGGAGGGAGTACTACGCTTG GGTTGAAAGCCATTCCTGACTCACTTTTAGCTGACAAATTTCACATCATTCCTGTGTAACTGAATTGTGTAATTGTCATCTATAGTTCTCCTTTATGTTTGCTTTATTTGTTCAGGGCAAATATTGGATACAAATAGTTTCAATATATTAGTATGTCTAGCAAATTTGATAATTCCAAAGAAAATCTAGATGTACATATGATTTGATATTTTTGGTATTAGCATTTATATTGTAACATGTCAGTACTTCTACAGAAAAAGAAGCCATTCCATGTCCTTAGTTATGTTGTAATTCCTCCATCCCAAAATAAATGTCTCAACTTTGTACTAACTTTAGTAACTTTGTACTCCCTCCATAAAGAAATAGAAGAGCGTTTAGATCACCAAAAGTAGTCATCTAAACGCCCTTATATTTCTTTACGGAGGGAGTACTACGCTTGAGACACTTATTTTAGGACGGAGGGCGTACTTGTGAAACAAA 1 0 3' arm Hordeum_vulgare mirnest MIR1122 7e-18 tae-MIR1121 1e-19 -46.6 .........(((((((((((.((((((((((.(((.((((((((((.((........)).)))))))))).))).)))))))))).)))))))))))........ (-46.6)