mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTAGTACTCCCTCCGTCCGG GAACAGAGGGAGTATTACTCA TGAAATTCTTAGCTAGTACTCCCTCCGTCCGGAATGGTGCTAGATACATCCGTTTGAGCGTCAAGTAATTCCGAACAGAGGGAGTATTACTCATCCATTCA TTTTTTTTTTTTTTTTTTAAGAATCGAATATTTCTGGTACTAGAATCTCAGAGGGTTACAACTTGGGAAGAATAATCACAAATGTACAAAAACCGCCTGCCACGCGCCCCGCCCCGCGAGAACAACAATTGATGGCTCATTTTTCCTTAACTATTATATCATACAAAAGGTCCGACTGGAGCTTAGCGCCCAGCATGTTCAGCCCCGGGATGGGCTGCTCGCGCGTTCAGCAAGGGCTGGAGCGCCTTGACGACGATGCTCATGTTTGGCCGGAAGTCAGCTTCGTATTGGACGCACAATGCCGCAACAGCTGCAAACTGTTTCAAACAACATACAGAAGAAGAAATGGTGTTACAAGTGGCCTCACCGAAGAATGCCTCGAATTAGTTATGACAGATGCAACCAAGCATGCTCCAAGAATGATGTTAATCATAGTAGTGGGACACAGTTTCTGGAAATGAAATTCTTAGCTAGTACTCCCTCCGTCCGGAATGGTGCTAGATACATCCGTTTGAGCGTCAAGTAATTCCGAACAGAGGGAGTATTACTCATCCATTCAAAACAAAAATGGCAAGCTTTGGTAAGTTCCCAGTAAAAATCAATATTTTTGTTTTCCTCAANCTTTTGTACTTTTATAAAAATTACTGGATAAACTGGACACAAGNACTGCCTTTAAATTCAATGCCATTTG 4 0 5' arm Hordeum_vulgare mirnest MIR1122 0.00000009 tae-MIR1135 0.000005 -30 .............((((((((((((.((.((((((..((((.(((...((.....))..))).)))))))))).)).))))))))))))............ (-30)