mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCCGTCTCAAAATAAGTGT AGTTATTTTTGGACGGAGGGA GTATACTACTCCCTCCGTCTCAAAATAAGTGTCTTAAGCTTAGTACAAATTTGTACTAGAGCTTATACAAAGTTGAGACAGTTATTTTTGGACGGAGGGAGTACTGCT GTTTTTTTTTCTTAAATTTTTTTTGCGGTATAGCTTTGATCTATTATTAGGATGCAAGACGTTTCAGCAATACACGTATCGTGACGTAACAGGTAGATCTATCCATGGTGTTTACAAATTACAAACCTCTAAAAAACACGGGCTAGATTTCATCTACAATACCAAAAACCTTGTAGATCCATCTTGATCCATATAGTTACTTTGACACTATATATATATACAGTTCTTCAACGAAATCCGAAATCCCTAGCTGATACTGTATAATCGTATACTACTCCCTCCGTCTCAAAATAAGTGTCTTAAGCTTAGTACAAATTTGTACTAGAGCTTATACAAAGTTGAGACAGTTATTTTTGGACGGAGGGAGTACTGCTTAATGAAGACACGCCCTCGTTGTGCGCCGCGACCCGGCCGGGCTAGCGCCGGACCGCAGGCAGAGCCTACGCGGCCGAGGGTGCCCGGAAGTACTTCACGCCGCCGGCCTCAGCAAAGGCCGTGTGAAATTTGTCGGTGGCCTCGTCGCCGGCCGTGTACTCCAGGCTCTCGTCGTTGTAGATATCCCACCATTTCTTCACAAGCATCTTGATGTCCTCCCTGTCCATGTTCGCCTCCTCGCCGGTGAACCTCCATGGCTTCGAACCCTGCACATATCACATATGCATGGCATGGAAACATCGATCATATACTCATAATTAAGAATCGACAAACACAGAAAAATGGCATGCCTGAGACGTACCGCGGCGCAGTAGTGCACGACCTTGACCTTGCCAAGCTCGACGTTCT 2 0 5' arm Hordeum_vulgare mirnest MIR1122 2e-30 far-MIR1122 0.00000002 -47.1 ...((.((((((((((((((.(((((((.((((((((((((((((((....))))))).)))))..........)))))).))))))).)))))))))))))).)).. (-47.1)