mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTATATTATGGGACGGAGCG CTCCGTCTCATTTTTGTGCAAC CAACTACTACTCCCTCCGTCTCATTTTTGTGCAACGATCTTATATTATGGGACGGAGCGACTACGCCGT CGGACGCGTGGGCAAGTTCAGGGTAAGCTCGATCCCATTTAGCTGCTCGAGGAATCAAGGATGAGCTGCGCTGACCCAAAAGCACCCGCCGGAGAGCAGAAGAAGACGTCATGGCCGGAGGTAGTGGGAAAGTCCATCGAGGAGGCCAAGGAGATCATCCTTAAGGACATGCCTGAAGCGGACATCGTCGTCCTTCCTGCCGGCTCGCCGGTGACCATGGACTTCAGGAGCAACCGTGTCCGCATCTTCGTCGACACTGTCGCGACCACTCCTCACATCGGCTAGCTAGCTACCTTTGCTCGCGGCAGGCATCACGTCTGCTGATGGCCAAGTAATAATTTCAATAAAGGATGAATTAGTGCGCGCTGACAACCAGCATGTTACTTATGGATCCATGTACTTTTCTTTTCCAATTGTGTGAATGGATGTGCTCCACGGGTTAATTATTTGCAGTTTGCGTTTTCCCATTTTGGTGTGCAACTACTACTCCCTCCGTCTCATTTTTGTGCAACGATCTTATATTATGGGACGGAGCGACTACGCCGTAATTATCTAAAAAAAAAAAA 5 1 3' arm Hordeum_vulgare mirnest MIR1122 0.0002 tae-MIR1120 0.0002 -18.2 .......((.((.(((((((((((...((((.........))))..))))))))))).)).))...... (-18.2)