mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGGACGGAGGGAGTATA TACTCCCTTAGTACAAAGTC CTGCTTCACCTGCCTTCTACAATACTCCCTTAGTACAAAGTCAAGTCAATTATTTTGGGACGGAGGGAGTATAACATAGGGCCACGGTTACA CAGTGTCCGGACACAGGAAGAATCTAGGCTGAAAACACAAACCTGGCTGCTTCACCTGCCTTCTACAATACTCCCTTAGTACAAAGTCAAGTCAATTATTTTGGGACGGAGGGAGTATAACATAGGGCCACGGTTACACGCAGCTGGTAACTGCGCCCGGATGCCACATTAACATAATTACATCTTGCATGTAACAAGTATACACATCTGATAGTAGTAGCTCTTGCAAGTCTTCTATCATCTTCTTGCCGATTACACTGCAGCCCTGCATCAATCAGCACTGAAGAATCACTTCGCTTTCCTCCTGTTTCTGCTCTATGGGATAATCCTACATCTGTGCAGATAGGATTTCCCGATCCAACAGTTACCAGCGTACGACTAACCGTGTCCAACAAGGCCGGGTTTCTCTTAGCCTTATATACGGCAGCGCGATAGAGGTAACTTCAGCGAAACCTTCCAGGCCTTCTGCGATGGAGGCTGGATATAATTGGCAGGTAAATACTGGATAGAATTACTTCAAGAAAGTTGTGTCATCGTCATCTTCATCTGTATCTAACTCAAGCCCCTCGGCAGCTAGAAGTCTGCTGATCTCATTCATCTTGT 3 1 3' arm Hordeum_vulgare mirnest MIR1122 0.00000000008 tae-MIR1122 0.000004 -25.1 .......(((.(((((.....((((((((((.((.((((((..........))))))..)).)))))))))).....)))))...))).... (-25.1)