mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATAGTACTCCCTCCGTCCGG GAACAGAGGGAGTATTACAAA GTCGATGCTTATATAGTACTCCCTCCGTCCGGAAATACTTGTTCTAGAAATGTTTGTTCTAGAAATGTACAAAATGGACGTATCTCCATAACTAAAATAAATCTAGATACATCTATTTCTAGGACAAGTATTTATGAACAGAGGGAGTATTACAAAAGGACTTG GGCGGCGTAGGCCTGTACTTGGTGCAGCTTGCAAAGCTAGCGAACCTTCATGTTACCGCCACCTGCGGCGCCCGCAACATGGATCTTGTGAAGAGCTTGGGCGCGGATGAGGTGATGGACTACAAGACCCCAGAGGGGACGAGCCTGCAGAGCCCCTCCGGCAGGAAGTACGACGGCGTGGTTCACTGCACCGTCGGTGTCAGCTGGTCGTCTTTCCAGCCATTGCTGACTGACGCCGGGAGAGTTATCGACATCACCCCCAATTTCTCGGCCATCCTCACATCTGCGCTGCACTGGGTGACGTTCTCCAAGAAGCGCCTCGTGCCCCTGCTCCTGTCGCCCAACAAGGCGGACCTGGAGTTCTTGGTCGGGCTGCTCAAGGAAGGCAAGCTGAAGACGGTGATCGACTCGAGGTTCCCCTTGAGCGACGCAGGCAAGGCGTGGCAAAGCAGTATCGATGGCCATGCCACTGGTAAGATTGTTGTTGAGATGGAGAGCTGATTGTCGTCGATGCTTATATAGTACTCCCTCCGTCCGGAAATACTTGTTCTAGAAATGTTTGTTCTAGAAATGTACAAAATGGACGTATCTCCATAACTAAAATAAATCTAGATACATCTATTTCTAGGACAAGTATTTATGAACAGAGGGAGTATTACAAAAGGACTTGCATACAGACAGTGGAGACGAATACGTAGGATGTAAACATACAGACCAGTCATTTGTGCGTTTGTTTATTGTGGTGATGTCCCTTTATTTATCTATCTATCTTATTATAGTACGTATAAGGGTATCGAGAGCTATGAGTTGCAAAAAACTGACTAGTCATTTGTGCGTTTGTTTATTGTGGTGATGTCCCTTTATTTATCTATC 5 0 5' arm Hordeum_vulgare mirnest MIR1122 6e-75 tae-MIR1135 0.000000009 -53.3 .............((((((((((((.((.((.((((((((((((((((((((..(((((((((..........(((((......)))))............)))))).)))..)))))))))))))))))))).)).)).))))))))))))............ (-53.3)