mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCTGTAAACAAATATAAGAG CTTATATTTCTTTAAGGAGGA GTTTCTACTCTCTCTGTAAACAAATATAAGAGCATTTAGATCACTAAAGTAGTGATTTAAACGCTCTTATATTTCTTTAAGGAGGAATATATAT GGTTCTAGTTTCTACTCTCTCTGTAAACAAATATAAGAGCATTTAGATCACTAAAGTAGTGATTTAAACGCTCTTATATTTCTTTAAGGAGGAATATATATAATTTGATGTGACAAAGGTTGTTTGTATACATACACACAGTAACACTAACACTGACACTAACACTAACAATTAACACTAACACATGTCCAGAATGAACTGGATCAGATTTCTGGATATTCATGATCTCTGGACTCATCATCTGCAGAGATGAGCATGAGCACAACACTCTTCATACCGGGCCTTTTGTTCCTGTCTTCCTCTAAACATGAGACAGCCAACTGGGCAAATGTTTTAGCTTGCGCATGATGGAATTGGCCATCCAAGCGTTCATCCACCAGGTCTGCAACCCATCCTCCATCGCCGTGCTTGGATCTGTCGACGATCATCTTCGCCACGGTTCTGACATCAGTCTCAAGCCCGTCTTTCCCATCCACCACCCAATCCGAAACCCTCTTCCCTTTCATCAGTTCCAGGAGCAGCACGCCGTAGCTGTACACGTC 2 0 5' arm Hordeum_vulgare_subsp._spontaneum mirnest MIR1122 4e-22 tae-MIR1121 5e-21 -34.9 ..........(((((.((((.((((((((((((.((((((((((((...)))))))))))).)))))))))))).)))).)))))......... (-34.9)