mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTTCTTCATCATCATCGTCG GAAGAGAAGAGAGAGAAGACA TAGAGAGAGAGAAGACAGAACGGAAGAGAAGAGAGAGAAGACAGAATCCCAACCCTAATGGCGTTGCGGAGTCTCGCACTACCTCTGGCTTCAGCTCCCGCAGTCTCGCCAAGGTCTTCTTCTTCATCATCATCGTCGTCGTCGTCGTCGTGTTTTT GTGGTTGGTGTAGAGAGAGAGAAGACAGAACGGAAGAGAAGAGAGAGAAGACAGAATCCCAACCCTAATGGCGTTGCGGAGTCTCGCACTACCTCTGGCTTCAGCTCCCGCAGTCTCGCCAAGGTCTTCTTCTTCATCATCATCGTCGTCGTCGTCGTCGTGTTTTTCGCCGTCTACCAACAGTCGTATAAGTTCTCTTACTCCAACACCGTTCCATGGCCGCCGGCAATTCCCTGTATTATTTTCCAACCGTCGATTTCCAAGTCATGTAGTTCGAATGGCTCCCGAGGAGGAAAAGATGACTCGCCGCTCTCCGCTTGATTTCCCTATAGAATGGGAAAGACCCAAGCCTGGAAGGAGACCTGATATATTTCCCCAATTCGCCCCCATGAAAACACCTATGCCAATTCCAATGCCAGCAGATCCTCCTGAAGAAGATGAGGAAGAGGAGGAAAAGAGAGAGGAGGAAGAAGAGGAAGATCCAGACAGGGAAAACCCAGACAACCCAGAAAAGCAATAGAATAGCTCCATAAAATAAGAGAGTTTTTGAACTATATTGCAGTCTCCACATTCCGACTGATAATTTTAGCTTAGAGTATTCGAGTTTGTTGCCAGCGACTTGAAGAAAGTCCTATTTTTGCATGTACTTTAGGTATAATGTCCTCTATAAGCAACT 4 2 3' arm Humulus_lupulus mirnest 100 100 -37.3 ....(((((.((.(((.((((((..((((.((..(((((((.(((........(((..((((((((((((((...((..........))....))).))))))...))))))))))))))))))..)).)).)).))))..))))).))...))))) (-37.3)