mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTGATTCCAGTTTTTGTCTT AGCTAAGATTGAGAAAGCAGGAA CAGCCGAAGTTCTTGATTCCAGTTTTTGTCTTCCAATAGGGAAAGCTAAGATTGAGAAAGCAGGAAAGGATGTG TTGGGGAATATCAGGGTGCATACAAGATATCCAAAGGGCTCCTGGATAAGTATGGTCCTGAGAGGGTTCTTGATACACCAATCACAGAGGCTGGGTTTACAGGGATTGGAGTTGGTGCTGCTTACTATGGGCTGCGACCTGTTGTAGAGTTTATGACGTTTAACTTCTCTATGCAGGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTATATGTCTGCTGGGCAGATATCTGTGCCTATAGTTTTCAGAGGGCCTAATGGTGCTGCTGCTGGTGTTGGTGCCCAGCACTCTCAATGTTATGCTGCGTGGTTTGCCGCCTGCCCTGGGTTGAAAGTGTTGGCCCCTTACTCATCTGAAGATGCTCGTGGACTGCTAAAGGCTGCCATACGAGATCCCGATCCTGTTGTTTTCCTTGAAAATGAGTTGTTATATGGTGAGTCATTCCCTGTTTCAGCCGAAGTTCTTGATTCCAGTTTTTGTCTTCCAATAGGGAAAGCTAAGATTGAGAAAGCAGGAAAGGATGTGACTATTACGGCTTTTTTCAAAAATGGTGGGCTATGCTCTCAAGGCAGCTGAGATACTCACGAAGGAAGGTATCAGTGCTGAGGTTATAAATTTACGCTCAATTCGGCCACTAGATAGACCCACAATCAATGACTCCGTCAGAAAAACAAACAGACTGGTAACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGAGCTGAAATCTGCACCTC 3 2 5' arm Juglans_hindsii_x_Juglans_regia mirnest 100 100 -21.2 ((.((....((((((.((((((((((.((.((((.....)))).)).))))))).)))..)))))).)).)).. (-21.2)