mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCGTTT ACAGTGAAGAGGAAGAAGATA GAAGTTGAAGGAGATGAAGACAGTGAAGAGGAAGAAGATACAGGTATGGGGGAAATTGATCTGGACAAAACAGCAGCAAGTTTGGACGAAAATTAAAATATCATCATCATCATCATCATCGTTTAATCAATCTGCTTGAG GTAAGGAGGCACCAAGAGCTGTGAGTGAACGTGAGGATATATTGCTGGCTGAACGAATGGCTAAATTAAGTCAAGCAAATGAAGAAGTTGAAGGAGATGAAGACAGTGAAGAGGAAGAAGATACAGGTATGGGGGAAATTGATCTGGACAAAACAGCAGCAAGTTTGGACGAAAATTAAAATATCATCATCATCATCATCATCGTTTAATCAATCTGCTTGAGGCCGATTACTTTTTTTGAGAGGTGTTTTTCTTATAAAAATTGTTTATTAGAGTATTATATTTTTTTAAGTTTCTGTTGAATAGAAAGTTGATTGCCAAATTTGGTCAGGTAGGCTGAAGCTGAAACTGTGTCTTAACTCTTAACAGCATCATATCATATCATATCATATCATATATGATTA 5 0 3' arm Lactuca_serriola mirnest 100 100 -21.7 .......(((.((((((((((.((((.((.((.((.(((...(((((..((....(((.(((((((.............))))))))))...))...)))))))).)).)).)).)))).))))..)).)))).)))... (-21.7)