mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATTTGTTTACAGAGGGAGTA CTCCCTCTGTATAAAAGTGA CTTACGTGATTTNCNNTTAGTACTCCCTCTGTATAAAAGTGACCTAAAACGTCTTACATTTGTTTACAGAGGGAGTATTTCCTTCATGCCACACCA TTGAAAAGAAAACAAGCCTTACGTGATTTNCNNTTAGTACTCCCTCTGTATAAAAGTGACCTAAAACGTCTTACATTTGTTTACAGAGGGAGTATTTCCTTCATGCCACACCACCGTACACACAAGATACAGTGCTTTATCAGGACACAAGCGCACTGACCCCTCTCCGCTTGCTGTTGCCGGTGCTTGCCCATCTCTCTTATTCACCGACGCCGTGTCATTTGCTTCACATCTCCGCTACAAGCCTGGACTGCGCCAGCGCCAGGTCGAATGCAGTGAGAGAGTGAGGAGGCAGCGTGACCTGCATCTCCTCCGCGGCGTCGCGCAACTCGATCGTCACCGGCACAACCTTGTTTGGGTTAGCGAAAGAGTTCTCGTCCATTACACTGCCGGATGTGAGAACAGTCGCGGTGGATCCGAGCGCATTGATGCTGCCCTGGAGCCCAGTTGCTGAGATCGTGAGGCTCACGGCATCTGGCCCGAAGTTCACAATCTTCACTCTTAGGAAGCTGTTCTCGTAATCATGCCACGTGATCGCAGATGCTGCCAGCGAACCAGAGTAGCTTGAACTGACTGTGATGGGATGGATCATAGCGCCGCTTGATTCACGGAAAAGCTTCTGCATCCAGTAACTGGGAGTTCCATATTGCTGCCAGGAGTTGAAGACGATAGCGTCTGGGTTCCACGTGCGGTCGTTATCATTTAT 4 1 3' arm Leymus_cinereus_x_Leymus_triticoides mirnest MIR1122 0.00002 100 -27.2 ....(((((.........(((((((((((((((..(((..(((.......))).....)))...)))))))))))))))....)))))........ (-27.2)