mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGAGACAGAGGGAGTAGC TACTCCCTCTGTCTATAGTG TAATATATATAATACTCCCTCTGTCTATAGTGTCAAAAAACGTCTTACATTTTGAGACAGAGGGAGTAGCTTATAGATT TATTTGCAAACAACCACAACGATAAAAGTAGCACCGACAAGAGCGGAAATATTCTGCCTGGTATATGCACCGTTGTTGATTCGAAGATATGCCACCCCACACAGTTTGACTTCTACCTCTGCAGTCATGCTGGAATTCAGGGCACTAGTAAGCCAGCACATTATCATGTTCTGTGGGACGAGAACAATTTCACGGCGGACGAAATGCAGACTTTGACAAACAACCTTTGCTACACGTATGCACGTTGCACACGATCTGTTTCTGTCGTGCCGCCTGTTTACTATGCTCATCTAGCCGCATTCCGGGCACGTTTCTACATGGACCGAGATATGCCAGAAAGCCTCTCGGTGAAGAAAGCCAACGGGGCAAATCGAAGCGCCATGAAGACTATGCCGGCGGTGAAAGAGAGGGTGAAGAGGGTGATGTTCTACTGCTGACAAGGGGACAACACTGGCACCCAGACATGCTATATAGCTAACACTAGGAATTAGAGGTTTAGATTAGATATGTAGGATGGGAAGAGTGAAGAACTTGGACGATGTTCTGTTAAGGGCGCAGCATCCTCCGTAATATATATAATACTCCCTCTGTCTATAGTGTCAAAAAACGTCTTACATTTTGAGACAGAGGGAGTAGCTTATAGATTGGCAAAATGTCAGTCCGGAAAATGTGCACAAATATGGTTCTTAAGGGCAGTCCTTGTCTGAACTTGGCAGGAATTTGTGCCATATTTTGGGCATGTATNNNNCACATGAATTTGGGGCATATATTAATGCAAGAATTAGGCAAAAAA 4 1 3' arm Leymus_cinereus_x_Leymus_triticoides mirnest MIR1122 0.000000000001 tae-MIR1130 0.00006 -28.3 .(((.((((...((((((((((((((..(((((.............)))))...))))))))))))))...)))).))) (-28.3)