mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCATCCGTCCAACAATA TTTGCAAGGGACGGAGGGAGTATT CTTTACTCTGTTACTCCATCCGTCCAACAATATAAGATGTTTTTGCAAGGGACGGAGGGAGTATTTTCCTACG GCATTTTTNNTTTTTTTTTTTGACGAGAGAAGGTAGTCTTTTATTCCACTTCATCCACTTTATTCCTTTACTCTGTTACTCCATCCGTCCAACAATATAAGATGTTTTTGCAAGGGACGGAGGGAGTATTTTCCTACGCAACATCGGAACCAGATTCCTGACTGTGCTTACACATTTCGCTTTCAGACACTCTGAATTACACGGTTGCGCAGCTAATTAATGAACTAGTATTGTACGTAGTAGCTTTATTATCTGTAAATAATGAGTAGATGAGCGCGGCGTGCACGAGTAGCAGCCTAGCAAGCCGGCACCAGCAGGCAGCAGCACTAGTTGCATCCGCGCGTGGAGTGCCGACCTAGCTAGCTAGCTAAATCTTCCGGGCCAGCTGGTCGAAGCTGATGGGCGCGGTGAACCCGGCCGCTCCGTCGAAGTAGGCGGCGGCGCTGAGCTCCCCGGCCCGCTGCGAAGGATGCGTCCGGTCCCAGAAGACGAACCGGTAGTGGTCGGCGCACAGTATCGAGTTAGGCAGGCAGTCGCTCTCCGCTCCCAGCCTCCCGCTCCCGCAGCACGCGCTGTCTATGCTCACGTACCCGGATGCTGCTGGGTTGGCGAAGGTGACTTGCGTGAGGTTGTAGGAGTCGGCGAGGGAGTAGGCGAGGCCCGGCAGCCGGGCGGCG 4 2 5' arm Leymus_cinereus_x_Leymus_triticoides mirnest MIR1122 0.000000004 100 -21.8 ...........((((((.(((((((..(((.((.....))..)))....))))))).)))))).......... (-21.8)