mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATGGGACGGAGGGAGTACAT GTACTCCCTCCGTCCGATAGC AAGCACTGCTAACATTCTGCTGGAAAGTTTGGTCGCTGTGGGGTACTCCCTCCGTCCGATAGCTTGCAAAAACGTTCTTATATTATGGGACGGAGGGAGTACATTTTACAATGTACAAGGAGTCATGCGTGTTCTGCCAGTTC GCATTTTTNNNTTTTTTTTTTGCGGAGTACAAAGCACTGCTAACATTCTGCTGGAAAGTTTGGTCGCTGTGGGGTACTCCCTCCGTCCGATAGCTTGCAAAAACGTTCTTATATTATGGGACGGAGGGAGTACATTTTACAATGTACAAGGAGTCATGCGTGTTCTGCCAGTTCTTTGATGTCATATCCAGGATTTCACAAGTACTTTATGCATTGTCATCCCAGGAAACAGGTTTCACTTTCAAATGTTACATAAATAATAGCCTAGTCAAAAGTGAAACGAACCCTAACACTGATTTTACTTTATCACAACATAGCGGCCTCAACTACCTCCACTTGTCTCTTAGTTCCTTTTTCTCAGACCAAATCCAAGTAACGAAAAGAGCAGCAACCAATGCGACAATAGTAATTAGAAGAAGGGCATAACTGAATTCATCGGTGAGTGAATCATAGGTTCTTGATGGAGCAAGCCGAGTGTAGAAGAGATCCACACCATATGTGAAAACAAGAGTAGTGGACTCCAACTTTGCAGGAATAGAAACAATTCCTCGCAGGGCTTCCACTTGAAGAGAGTGCGTCACATAGGACTGTGGAATAATAGGCAAAGAATCTGTTAATGGTATAATACCCTCTTCTTTCTCTTGTTGTGTGGGATTCAGTGAACGGCGTGGGTCAAGAAAGCGCTTGTCAAGTGCCAAAACCTGGTCACCAATCGTGCCAATGNNNAGCTGCTTGGAAGTGATACCCTTGGCTGTTTGTGTAACTGCCATTGCCT 3 0 3' arm Leymus_cinereus_x_Leymus_triticoides mirnest MIR1122 0.00000000003 tae-MIR1120 0.00000000003 -46.2 ....(((((.((((...(((..((...((((..((.(((((.(((((((((((((((.((((...((......)).......)))).)))))))))))))))...))))).))..))))...))..)))))))..).)))).. (-46.2)