mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGGGCCCACATGTCAGCCAC GCAGCTGACATGTGGGCCACCAT GGATCCTCTGCAGTACTGCCCTCTGACTTTGGGCAGCTGACATGTGGGCCACCATGCTAGCGGGCCCACATGTCAGCCACAGAGTCCCTCTGCAGTATTGCAGGGAAGG GCATTTTTTTTTTTTTTTTTTGTCAAAGGTGCCCAAATATGAGGGAAACCTAAAATTGAACCATTGCCACATCACAGAAAAACAATTAGCACACGGCGCATCTCATCGACACGCAAAAACACGGTCAGTCGACACACGGCACAGCACGACCGATGTGAAGCGTCACCAATCGGAACCGGATCCTCTGCAGTACTGCCCTCTGACTTTGGGCAGCTGACATGTGGGCCACCATGCTAGCGGGCCCACATGTCAGCCACAGAGTCCCTCTGCAGTATTGCAGGGAAGGCTCGTCGCACCAATCAGCATATGAAGGCAACATCAGCATGCTCGTCACTGCAGTAGAGGCCAGGCTGCTGGACGTACCCCTGCTTGGACAGCAGCCCGCGCGCCCTTCGCACGAGTTCCCTGTTGGTCACCTTCCCGCGCTTCTCCTCCGCGAGGACCGCCTGGATGGCGTTGCTGAGCGCGCCGTAGGACACGCCGCTGGCCGTGGTCAAGTCGGCCGAGGACTCGTCGGTCTGGCACCCGCTGATCAGGACGCCGTTGCGTGGCGGCGACACCTTCGCCGCGGCACCTGCGTACACCTCCTCGACGCTCCGCACCTCCTGCTCCATGGCTGGTCCGAGCGCGTCCGCCAGATCCCCGCCTCGGCCGCCGTCCGGCTTAGCCTTCGGGATCATCTCTGTGACCGTGGCGGCCTGATCAGGGCCATGCGGGAGCTTGCCGCCCACCATGGCATTGACGAACTTCTTGATCTTGGGCGTGGCGT 5 0 3' arm Leymus_cinereus_x_Leymus_triticoides mirnest 100 100 -58.1 ...(((.((((((((((((.....(((((((....(((((((((((((((............)))))))))))))))..))))))).....)))))))))))))))... (-58.1)