mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTACTCCCTCCGTCCCGAATT TTTGAGACGGAGGGAGTAGAA TCTGAGACAATCACTATGATAGTACTCCCTCCGTCCCGAATTACTTATCGCTGAAATGGATGTATCTAGTTAGTGCTAGATACATCCATCTGAGCGACAAGTATTTTGAGACGGAGGGAGTAGAATTTTACATGTAGACACAC GCATTTTTTTTTTTTTTTTTTGAAGTTATAAGTTAATCAATTACTTAATCTGAGACAATCACTATGATAGTACTCCCTCCGTCCCGAATTACTTATCGCTGAAATGGATGTATCTAGTTAGTGCTAGATACATCCATCTGAGCGACAAGTATTTTGAGACGGAGGGAGTAGAATTTTACATGTAGACACACACAAGCACCTGAAACTGCCAACCTCAGGTTCCATCTTTCTTTGGACTTTGTTACAAGGTCAGAACTCCTTATGCGAGCTCTATAACAAGTGCAGATGCTCCGCCACCGCCGTTGCAGACACCAGCAACTCCGACTTTGCCACCCTTCTCCCTAAGAACACCAAGAAGGGTGACCAAAATGCGAGCACCACTGCACCCAAGTGGATGTCCTAAAGATACAGCTCCTCCATGTACATTTATCTTTTCTGAAGGAATCCCGAGAAGCTTTTGATTTGCAAGTGCAACAGCCGAAAAGGCTTCGTTAATTTCATAAAAATCAACACGAGAGGACTCTAGGCCAGCATTTGCAAGAGCCTTTGGTATGGCAAGTGCTGGGGTGGTGGTAAATAGTTCAGGAGCTTGGGCTGCATCGGCAAATCCCTTGATCCTTGCAAGGATTTGCAATCCAAGTTCTTGAGCCTTCTTCCCACTCACCAATACTAATGCTGCAGCACCATCACTTATACTAGAAGCATTTCCAGCAGTAACAGTGCCAGCATTCTCCTTGAATGCTGGTCGTAGCTTCTTCAGTTTGACTGCGTCAAACTTGTCTAGGCTCTCATCTT 3 0 5' arm Leymus_cinereus_x_Leymus_triticoides mirnest MIR1122 0.0000000001 tae-MIR1136 0.000000002 -61.7 .........((((...))))..(((((((((((((.((((.(((((.(((((...(((((((((((((((....)))))))))))))))...))))).))))).)))).)))))))))))))..........(((....))). (-61.7)