mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTTCTTTACAGAGGGAGTA TACTCCCTCCGTAAAGAAATATA CTTCAGGTATACTCCCTCCGTAAAGAAATATAAGATCGTTTAGATCACTATCTAAACGCTCTTATATTTCTTTACAGAGGGAGTACTATAT CGAGAGAACGCACCGCCAGCAGCACGCCGGCTCCGCCAAAGGCCTCGCCGGGATGAGGGAGAGCCACCAGCACCTTTATTCCACACGGACACTGCCACCCCCATCTCGACGGCATGACCGGGAACCACTACCCTACTAACTACAAGCCGGAAGCACAGGAACGGGGTTCCCGCCCTCTCCCATCGCCGGAGCGGCAGACGGAGAGCGAAGGAACCACCGTCCTGGCCGGCGGCAGATCGAGGGGACGAAGTCGCCTTCCTGTTCGCTTCCCTCAACACTGTAGAGAGGGGAAAGGGGGCTGCTGGCGTTCTGGTAATAGGTAATCCCGAATTCATAGTACATGTTTTTCTAGCCCTTTACTATGAGATACCAGGTAGTTATTCGCAAAGAAAAAGAGATACCAAGTAATTGCCCTGCAGAGTTCATGGCAAATGTTGCGTAGAAAAAGGAGTTGAGGCCAAATGTTTGTCATCAATCAGGCTGGGAAGCTACCAAACAGATTGTTCTACTTGTCTATTCCACCGAATATATTCGTGGACGTGGTAAGATCTGCCAGCCGCACCGCTTCATTGCCGAGTGGGAGTGGCTGGACGAGGTTTATAGTGGAGAAGCCATTCGGTCGCGATTACGAGTCCTCGGCGGAGCTTACCCGATCCCTGAAAATGTATTTAGAGGAGGAGCNNATCTTCAGGTATACTCCCTCCGTAAAGAAATATAAGATCGTTTAGATCACTATCTAAACGCTCTTATATTTCTTTACAGAGGGAGTACTATATAT 1 2 3' arm Leymus_cinereus_x_Leymus_triticoides mirnest MIR1122 4e-25 tae-MIR1121 2e-17 -43.8 .....(((..((((((((.((((((((((((((((.(((((((((....))))))))).)))))))))))))))).))))))))))).... (-43.8)