mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGCAGGTGCAGCGTCATCTC GAAGACGTAGTACCTGAACCC CAGCTCCTTGGAGAAGACGTAGTACCTGAACCCGGCCGCCAGCTCCTGCAGCGGGTTGGACCCGCTCACGTGGCAGTGCAGGTGCAGCGTCATCTCCCCTCCTCC CGATTTTTTCTTTTTTTTTTTGCTTGCTTAACAAGGTGAACGAATGCACCAATTTAGTTGGTAGTAATGTACATCTCAAGAACTGAAGAATGGTGTCTAGAGTTCCTCTCTTGCCAAGGCAAAGAATGACCAGACAGAGCAAAAGAATGAAATGAAAGAATAATTCTTTCTTTCTCTCTTGCGCGCAATGCAATGCACTGCATTGCTTACCCTATCTCTCAAATCTTTCTCAATGTACATACTTATATACCCGGACCGGTTCCGATCATGATCATAGGAGGAGCGAGACGAGGGCGTTGAATATGTTCCATGTCCTTCGTCTCTTGGTGATCTCGCTCTGCAGCTCGTCGACGAGCCGCCCATCCAGCAGATTCCTCTTGGTGGCTTCGCGGAGGGCCCCCCAGCACTCGATGCGGTTGTACTTCCTGGATGAGGAGTGGAAGTGCACCCAGACACGGGCGTCCATGAGCTCCGGCCGTGCCGCGAAGAGGGCGGCGTCGCCGTGCACCACCGCCTTGAGCACCAGCGGCAGCTCCTTGGAGAAGACGTAGTACCTGAACCCGGCCGCCAGCTCCTGCAGCGGGTTGGACCCGCTCACGTGGCAGTGCAGGTGCAGCGTCATCTCCCCTCCTCCTGGACCGCCGGTGCAGGTCATCTCCTTCCACTCGGCGAAGACGTCGTCCCGCCGCCACCCCCACCGTCGGAGCTGCTCGCTCATGATGGTCTCCGACA 3 0 3' arm Leymus_cinereus_x_Leymus_triticoides mirnest 100 100 -43.7 .........(((((.(((((.(((((((.((...(((((.......((.(((((((...))))))))).))))).)).))))))).))))).)))))........ (-43.7)