mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTCTTCCTCTTCCTCATCAT GCAGAGCGAGAAGGAGCAG CTGCTCCTCCTGCTCTTCCTCTTCCTCATCATCATCATCATCATCATGATGCAGAGCGAGAAGGAGCAGCAGCAGAA CCTGCAGGTACCCGGGAATTCGGCCATTACGGCCGGGGATTATTCGCAAAAAAAAAGTAAGAGCACAGCGGTGAATTTGGACGCTCAGAGATCTGACTCTCCATTGAACTGCAGAGACAGCACGCAAGCTAGAGACAATGAGAAGTAGACATGGCTTGAAGCTCTTCCTGCTCCTCCTGCTCTTCCTCTTCCTCATCATCATCATCATCATCATGATGCAGAGCGAGAAGGAGCAGCAGCAGAATACTACGGTGGTGAGCCATCTCCCTGGCTACCAAGGACCTCTCCCCTTCTCCCTGAAGACAGGCTACGTGGAGGTGGACGAGAGCAACGGCGTCCGCTTCTTCTACTACTTCATTCAGTCGGAGAGGAATCCGGCGGAGGATCCCCTCTTGCTCTGGCTCGCCGGCGGCCCCGGATGCTCCGGCTTCTCTGCCCTTGTCTACGAGAACGGTCCTCTCAGTTTCAAGTCGCATTCCTACGTCGATGGTCTGCCAGAGCTGGTGTATAGGCCAGATTCCTGGACCAAGTGGTACGAGGAGCACCCAGAGTTCTTACCGAATCCACTTTACATTGCCGGAGATTCGTATTCTGGCTTAATTGTTCCACCGCTAACCT 3 2 5' arm Lolium_perenne mirnest 100 100 -26.1 (((((....((((((((..((((.(((..((((((.((....)).))))))..))).)))))))))))).))))).. (-26.1)