mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGATCATCATCATCATCTTTG AGAATGATGTGATGGTGGTC CTCCACAGCTCTAGAATGATGTGATGGTGGTCAGCCCTGACAAAAGGATGGATTCTTGAAAGTGGCAGCAGCACAAGTATGTAAAAGAAACTGGCCTCCAGCTGACATGGATCATCATCATCATCTTTGAGCTGGTTC AGCCACAAGAAGAAGGTTGAATGGAAAGTACTCTCCAAAGAACTTCTAAACGGTAGCATTAAATAAAAAGAATTTTTCACATCTATGGGCAAATTACAAGGTGGTTTTGGGTTTTAACCAGATGAGTAGCTCCACAGCTCTAGAATGATGTGATGGTGGTCAGCCCTGACAAAAGGATGGATTCTTGAAAGTGGCAGCAGCACAAGTATGTAAAAGAAACTGGCCTCCAGCTGACATGGATCATCATCATCATCTTTGAGCTGGTTCCGAAGAAGGTCCACCTGAAGCAGCTGCCACATGGCTGGCTGAACCATTCTCAATCGGAGGAGGCACACCCCACTGGNCGTCAGACTCGAGGGGCTCAAACACATGA 4 2 3' arm Lotus_japonicus mirnest 100 100 -38.3 .....((((((.(((.((((((((((((.((((((..((.....(((.(((.(((((.....((((....)).)).........))))).))).))).))))))))....))))))).))))))))..)))))).... (-38.3)