mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGATCATCATCATCATCTTGG AGAATGATGTGATGGTGGTC CTCCACAGCTCTAGAATGATGTGATGGTGGTCAGCCCTGACAAAAGGATGGATTCTGGAAATGGCCAGCAGCACAAGTATGTAAAAGAAACTGGCCTCCAGCTGACATGGATCATCATCATCATCTTGGAGCTGGTTC ACTCTCCAAAGAACTTCTAAACGGTAGCATTAAATAAAAAGAATTTTTCACATCTATGGGCAAATTACAAGGGGGTTTTGGGTTTTAACCAGATGAGTAGCTCCACAGCTCTAGAATGATGTGATGGTGGTCAGCCCTGACAAAAGGATGGATTCTGGAAATGGCCAGCAGCACAAGTATGTAAAAGAAACTGGCCTCCAGCTGACATGGATCATCATCATCATCTTGGAGCTGGTTCCGAAGAAGGTCCACCTGAAGCAGCTGCCACATGGCTTGCTGAACCATTCTCAATCGGAGGAGGCACACCCCACTTGCCGTCAGACTCGAGGGGCTCAAACACATGAAGGGTACCATCTGACAGTCCTTGTAGCAAACGGATTCGGTTCTGGCGGATGTGCGGCGATTACAAGTTGGTTGCACGTGGGAACGGACACTGGAGGGGAGATAAGCAGAAGGA 3 1 3' arm Lotus_japonicus mirnest 100 100 -45.6 .....(((((((((.(((((((((((((.(((((((((......))).((((..........((((((......................))))))))))))))))....))))))).)))))).))))))))).... (-45.6)