mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGCAGCAGCAGCAGCTGCAC GCTGTTGTTGCTACTGCTGCT GAGGAACCACAAGCTGTTGTTGCTACTGCTGCTTTAAATGGGAGCTGCAGCAGCAGCAGCTGCACCACCACAAT GGACAATGTTTCCACACCTTCAGGGGAAGCACCTAGTGTTTCTTCCTCTGGTAATCAACCACCACAACCCACAACCAAGAAAAAACGAAACCTTCCTGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCACCGAAGACTCTAATGGCGACGAACAGATTCGTATGCGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCACCGGAGAGGTCACAATCTGCCATGGAAGCTGAGGCAGAGGACGAGCAAGGAGGTGAGGAAGAGGGTGTATGTCTGCCCGGAACCAACGTGTGTCCACCATGACCCTTCTCGAGCGTTGGGTGATCTCACCGGAATTAAAAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGAGAAATGCTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGGTTTGCGGTACCAGAGAGTATAAATGTGACTGCGGCACGGTGTTTTCGAGGAGGGATAGCTTCATTACTCATAGAGCTTTTTGCGATGCGTTGGCAGAGGAGAGTACAAGATCTCAGACTCAGAAGGCGAATTCGGAGTCTGAATCGAAGGTTTTAACGGCTGATTCTTCACCGCCGCCAGCTGCTGCCACTGCCGCCGCCGCTAATGCTTCTACTACTCAGTCAAATAGTGGCATTTCCTCTGCTTTGCAGACACAGAACCTAGAGTTGCCTGAAAATCCCCAACAAATCAGAGAGGAACCACAAGCTGTTGTTGCTACTGCTGCTTTAAATGGGAGCTGCAGCAGCAGCAGCTGCACCACCACAATCACTGCCACTACCAGCTC 5 0 3' arm Lotus_japonicus mirnest mir-598 0.0002 100 -27.9 ............((.(((((((((.((((.(((((.....))))).)))).))))))))).))........... (-27.9)