mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTCTTCGTCTTCCTCTTCCA GAAGAGAAAGAAAGAGAGT CTCATCAACCATTACCACTGGAGAGATAGAAAGAAGAGAAAGAAAGAGAGTGATGGCTAGTTGCAACATGGCATCAGCTGCATCCGGATTTGTGCTGTCATCCGGAAAGACAATCTCTTCGTCTTCCTCTTCCAGGATCAGTTCCATGGTGATGTTCCCTTCA TATTTTTGTTTCCTTTGTCATCACACTCATCAACCATTACCACTGGAGAGATAGAAAGAAGAGAAAGAAAGAGAGTGATGGCTAGTTGCAACATGGCATCAGCTGCATCCGGATTTGTGCTGTCATCCGGAAAGACAATCTCTTCGTCTTCCTCTTCCAGGATCAGTTCCATGGTGATGTTCCCTTCAAAGTTCAACAACAACAAAAGTGGTTCTTTTAATAGGCTTGTTGTGAGGGCTGAAGATGAAGGTGCAGCTGCATCTGCTGCACCTGCAACGGCAACACCACCGGCTGAAGGTGAAGCTGCTGCTACTGCTCCAAAACCAAAGCCACCTCCAATTGGCCCCAAGAGAGGAACTAAGGTAAAGATTCTTAGGAAAGAATCATACTGGTACAAAGGCTATGGTTCAGTTGTTGCCGTTGATCAGGACCCCAAGACTCGCTATCCTGTTGTGGTTAGATTCAACAAAGTTAACTATGCAAATGTATCAACAAACAACCATGCATTGGAT 3 2 3' arm Arachis_ipaensis mirnest 100 100 -47.2 .........((((((((.(((((.(((.....((((((.((((((((((.((.(((((...(((......)))..)))))..(((((((..........)))))))....)).))))))..)))).))))))....)))..)))))))))))))......... (-47.2)