mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAGGCAGCGGTTCATCGAT CGATAAACCTCTGCATCCAGC GAATTTGTAAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAAATTTGGCTGTGGAATCCTACACAAAGCAAGAATCGGGCGATAAACCTCTGCATCCAGCGCTCCACTTTGCCTCTTT TGTATTCTATGACTCACAGTCACAACAAAGAAATAGAAAGAGAAAGAAAGAGAAAGAAAGAGAGAGAAAGAAAGAAACCATGGATGGATAGAATAGATAGATAGATGCGGCAATGGTGACTCACTCACCTTTGAGATTCCTGCTTCACATCACATATACACACCATACACATATTCTTCCTCTCTCACACACTCACTCACTCACTCTTTTTCGGTTTAATTTTCTTTCCGTTTTTCGAATTACTATATATATTGCTTTTGTTGTTACTTTGTTATTCCGTATTTTTGCTCGACTCTGATTGGAGAGATTAAAAAAAAAACGGAGTCTCTCTCTTGCTAGTTACTATTGGTGTTCTCCACTTCATATCACTCTGTTTAAGTGTTCTTCATTTCTGTATTTTCTATTTTTTTTTCCGAGACTGAAAACGAATATTTTATTTATTTCAAATATATTTTGTGAATTTGAATGTGAATTAGTGTATGAATTTGTAAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAAATTTGGCTGTGGAATCCTACACAAAGCAAGAATCGGGCGATAAACCTCTGCATCCAGCGCTCCACTTTGCCTCTTTTCTCTTTTTTTTTCTTTTCTTTAATTATTTATTT 4 0 5' arm Arachis_ipaensis mirnest MIR162_2 0.00000000003 vvi-MIR162 4e-16 -41 ......((((((((.(((..(((((.((((.((((.((((.((..(((.((...((((...((((....)))).)))).)).)))..)).)))).)))).)))).))))).))).))))))))...... (-41)