mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATCA GTGACGGTGAGATGTGGGC GAATATGGTGACGGTGAGATGTGGGCATTGTGCCAATCTGCTCTCTGTTAATATTGGAGGTTCCCTTCAGTCGACCACCATTCCTCCTCATCAAGATCCCCAGAAACAACACCTGAGCTCTGAGGATTCAAATAAGAACTGCGGCTCATCATCATCATCATCATCATCATCATCC TTCATTTCTCTGTACACGAGGATTTCTTTAATAATAACAAATTATATCTTGTTCTTTTTTCTGTTTCACACCTTAGCCTTTCTCTCTCAAGAAATACTACCTGATCAGGCTATAAATTACAAATTAAGCTTTGAAATATTATGTCAATGGATTTGATGGCATCCGAACGCGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTTCCATGCAATAGTTCAATGAATATGGTGACGGTGAGATGTGGGCATTGTGCCAATCTGCTCTCTGTTAATATTGGAGGTTCCCTTCAGTCGACCACCATTCCTCCTCATCAAGATCCCCAGAAACAACACCTGAGCTCTGAGGATTCAAATAAGAACTGCGGCTCATCATCATCATCATCATCATCATCATCCAAATCCAACAAGTTTGGTCATGCATTTGAGTCTCTAGAGCTTCATGACCAACCTAGAATCTCTCCCATACGCCCACCAGAGAAAAGACAGCGGGTTCCTTCAGCATATAACAGGTTTATCAAGGAGGAGATCCAAAGGATTAAGGCTAGTAATCCTGACATTAGCCATAGGGAAGCTTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCCCACATTCACTTTGGATTAAAGCTGGATGCCAACAGGGAACCAAAGCTAGACCAGGCTTTTGCAGGAGAGGGAACTCAAAAGTCTAATGGCTTCTACTAAAACAAAACCGGTATACACAATATACCCCCTCCTGTGAGAAGCACCTGCAGGCTTCTCTCTCTCTCTCTATATATATGTATATGTATGACGCAACTACTAAAAAATATTGAGGTT 1 2 3' arm Malus_domestica mirnest 100 100 -34.365 ((..(((((((.((((((((((((((...((.((..((.((((..((((....((((.((.((...............................)).))))))....))))...))))...)))).(((......)))..)).))))).)))).))))).)))))))..)).... (-34.365)