mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTGTTTTTATGTTTTTTTTG AAGAAAAGGTGGAGGAGAAAGAG AGGAAGAAAAGGTGGAGGAGAAAGAGGAATCAGATGAGGACATGGGCTTCAGTCTATTCGACTAGATTTGACTTATGGTTACATCGCCATACATCTGATTTGGCGCCTTTTTAAATGGGCATTTTGTTTTTATGTTTTTTTTG AGCATTGGCATCAGTGCTTCGGTGTGGTGTTGCTGTTGCAGCTGTTGCACCTGGTGGTGGTGGGGCTGCTGCTGCCGCTGCTTCTGCTGCAGCTGAGGCAAAGAAGGAAGAAAAGGTGGAGGAGAAAGAGGAATCAGATGAGGACATGGGCTTCAGTCTATTCGACTAGATTTGACTTATGGTTACATCGCCATACATCTGATTTGGCGCCTTTTTAAATGGGCATTTTGTTTTTATGTTTTTTTTGG 3 2 3' arm Manihot_esculenta mirnest 100 100 -33.9 ..((((((((.(((((((...((((.((((((((((.((..(((((((..((((...((.....))...))))...)))).)))..))...))))))))))...((((........)))).)))).))))))).)))))))). (-33.9)