mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAATGTTGGCTGGCTCTAGG TTGGACCAGGCTTCATTCCCC CATTAATGGTTGTTTTTGAAGGGAATGTTGGCTGGCTCTAGGCATTCACAAGTGTGGGAGAAGAAATCGATCAGAAGCAGTGGAAGCTTTGGACCAGGCTTCATTCCCCTCAATATAATTACCATCT GATTGTCGCNNAATGAGTAAAAACTCATTAATGGTTGTTTTTGAAGGGAATGTTGGCTGGCTCTAGGCATTCACAAGTGTGGGAGAAGAAATCGATCAGAAGCAGTGGAAGCTTTGGACCAGGCTTCATTCCCCTCAATATAATTACCATCTTCTTCTTCTTTTTCTTGGATCGTAAGTCTGATATTTGATGATGAGAGGCTAAGGTTGATGGGAATGTTGTTTGGCTCGAGGCGATATAGGTTTGATCTTTTATCTTTGACTTCTGGGATTATTTTTTCTCGTGAAAATTCAAAGATATATATATATAGCCCTATGTAATCTCGGACCAGGCTTCATTCCCGTCAACCAACCCTTTCTCTATTTCTGATCTGAAAAATCTCTCCTTCCCCTCCAAGAAAATGATGATATGTTTCATTTTCAGTTGATGGTAAGCTCTCTCTCTCTTAGGGTTTGATTCTGTCTCTTTCTCTCTGGAGAAGTTTCTGCGGATGGACTTTGCATGGAGTCATTTTCTGAACCACTTGTCAAATATGCTAACAAACAAGACCAGAAGTTACCTCTGACAGATTTCTGCTTTACCTTTTTGGGTTGACCATGATTTCTTCATTTCTTTCTTTCACTTTTCACAACATTCACACAAAAAAAAAAAAAAAGACAGAAAATTTGGGAAAAGATAGAGAAGCTGTGATTTGGGATT 3 2 5' arm Manihot_esculenta mirnest mir-166 0.0000001 vvi-MIR166b 0.0000000004 -41.5 .....(((((.(((.((((.(((((((..((((((.((.((((.(((((..((.(((..((.....))..)))...)).))))).)))).)).))).))).))))))).))))...))).))))).. (-41.5)