mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGCAGGGCAATTCTCCTTTG AGGGAGAGTCGCCTGCCATT GATATTAGAAATGGCAGGGCAATTCTCCTTTGGCAAAGCAGTTTATGCATTAATTTGCATGCCTATGTAGGATCATCATCCGTTTGCCAAGGGAGAGTCGCCTGCCATTCCTCGACC GCATAATCCTGAAATATTTGAGTAAAAATGTTAATGGGTTTCAACGAAGGGCAAATTATTGCATGCTACAAAGGCCGTTGAAGATTCAGACCCAATATAAAAGTTCTGAATTTCGACATTCAAAAAGGAAATAATAATTAATGAGATGATTTTGAAGAAAAGTTGCTGTTTGGCGGATCAATCAAGTGCTTATAATCATCCAGCTCCACATCAATAGATTCTTCAAGCATGGATCAATATCCCACTGACTTGCTGATCCTTTGTGCTCTTCAAAACACTGACATAAGCAATTACCTGCCAAATGATGAAAGAAAGAAAAGAAATCCCATTAATGGCATGGATAAAGATCCGCAGTTGAATAGTTAATCATCTACATTTGATAAATGTATGATATTAGAAATGGCAGGGCAATTCTCCTTTGGCAAAGCAGTTTATGCATTAATTTGCATGCCTATGTAGGATCATCATCCGTTTGCCAAGGGAGAGTCGCCTGCCATTCCTCGACCATGCACGCCCGTG 1 1 5' arm Manihot_esculenta mirnest mir-399 0.0000001 vvi-MIR399h 0.000000006 -47.1 ......((.(((((((((.(.(((((((((((((((((((...((((((......))))))....))).((((....)))).)))))))))))))))).)))))))))).))..... (-47.1)