mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCGTCATCATCAACATCA GAGTTGGAGGGAGACGCAGACG CATCGGATCGGAGGTTGGAGTTGGAGACATTGGAGTTGGAGGGAGACGCAGACGCAGACGCAGCCAATCAAAATCAAACAAAGGGTGGTGGTGGCGGCGGCGATCCCAGACAAAGGCAGTACGAACAGCAACAACAGGAGGAGGTGGAAGACAAGATGGATAGTAGCAATAGCAATAGCAATACCAATAGCAGCTGCTACAATCAAAACAACAACAACCACAATGACAAGGAAATGAGGGAGTTGGAAGATATGTTGTCTAAGCTCAACCCTTTGGCTCAGGAATTTGTGCCTCCTTCCCTCCGCAGCCACCAGGGGAATCATCGTCATCATCAACATCATCATCAAAATCAAAATCAAAATCAAAATC GGAGGGATGGATTTAGGGATTGGAAGGGGAAGGGAAAGGGAAAGGGAAAGGGAGTCATCGGATCGGAGGTTGGAGTTGGAGACATTGGAGTTGGAGGGAGACGCAGACGCAGACGCAGCCAATCAAAATCAAACAAAGGGTGGTGGTGGCGGCGGCGATCCCAGACAAAGGCAGTACGAACAGCAACAACAGGAGGAGGTGGAAGACAAGATGGATAGTAGCAATAGCAATAGCAATACCAATAGCAGCTGCTACAATCAAAACAACAACAACCACAATGACAAGGAAATGAGGGAGTTGGAAGATATGTTGTCTAAGCTCAACCCTTTGGCTCAGGAATTTGTGCCTCCTTCCCTCCGCAGCCACCAGGGGAATCATCGTCATCATCAACATCATCATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCATCATCAGCTTCATCATCCTCACCATCCTCATGCCCAGAAAGCCGGCTATTTTATCCCCAACTCCGCATTTGCAATCGATGAACTCGGAATTGCAGATCCCAGCCGTTTCGATCCCAGAAGGAAGAAAAAT 5 1 3' arm Mesembryanthemum_crystallinum mirnest 100 100 -76.4 .....(((..((..((((..((((.((...(((.(((((.((..((((..(((((...(((.((((.(((...((.......)).))))))).)))...))).((((.......(((.((....)).((.......((((((((((............(((.((((((...((....((.((....)).)).)))))))).)))..........))..(((((.......((..((((((.(((((.((((.....))))....)))))))))))..))......))))))))))))).....)).))).....)))).))..)))).)).))))).))))).))))..))))..))...)))...... (-76.4)