mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTTCAAGAAAGCTGTGGGAAA TTCCACAGCTTTCTTGAACTT CAGGCAGGAACAATTACAAGTCCTGCCATGCTTTTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAAGCTGTGGGAAAATATGGCGTTTCCCAGGACTTGGACCGACT CGATCTCAGGATCGATTCAATGTTGATCAATGAGCGAGCTAGCTCCACAGGCAGGAACAATTACAAGTCCTGCCATGCTTTTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAAGCTGTGGGAAAATATGGCGTTTCCCAGGACTTGGACCGACTTATTTCCAATGACAGACCGTACACGGTTCATCTATTCCGTTTTGTGGTAAGTTTTTCCCCAATTATGTTCTCCTGGTAGTAATCAGGAAGATATATATATAAATCAGTATCATATGAGCAATATTTGATGAGCATGAATTATTGCATATCTGTAATCTTTGAGGAGTCATTAGAATTTAGTTGTTGATCTACAGTATCAGATTTGGGTAATTATTCCTTCTGCTGTTCCAATTCTTGAGATATTCTAGGGAATTTATTTGGGATCTGTTTGGATGGTAACTCACTGAAATTCAAGAAGATTTGAACACAAAAAAGAAGAAACTTTCAAAATGCTATCATTTTATTTATCTTTTTCTCTATTTACTTCTTCCTTGCTAATTTCAGAAAACAATTCCCATTCACTGCACCATTATTGCCCATGCAGTTGTAGAAAATACAAATTATATATNTTGCTAATATTTATTTTT 0 0 3' arm Mesembryanthemum_crystallinum mirnest MIR396 0.000000003 vvi-MIR396b 0.000000000002 -60.6 ................((((((((((((((.((((((((((((((((((((((((((((((..((((((...................))))))..)))).......)))))))))))))))))))))))))).)))))).......))))))))........ (-60.6)