mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCCTCATCTTCT AAGAGAGACGGTGGTGGTGAGA CATCATCATCATCATCATCATCCTCATCTTCTAGAAGAAGAGAGACGGTGGTGGTGAGATGCACCCA CCCAACCAAACAATCACCAGCCATTACCACCATATAGCAGATAGAAAAAAAGAAAAAGAAAGATACCAAAACAACAACAACAACAATGGCTTCCCTTTCTCTCAATAAGCTCCTTCCATCAACACTAGCAATACCCACCTCATCATCATCATCATCATCATCCTCATCTTCTAGAAGAAGAGAGACGGTGGTGGTGAGATGCACCCACCAGAAGAAGGCGGCGCCACCAGCTGCCACCTCCTCTCCGGCGGCGGACACGGCGGCTCCGGTGGTGGTGGATCCGGCGAGGCTGGAGGTGAGAGTGGAGGAGAGAGAAGGTTACTGGGTGTTGAAGGAGAAGTTTCGAGAAGGTATTAACCCACAAGAGAAGATCAAGATTGAGAAAGAGCCTATGAAGATGTTTATGGAAAATGGGATTGTTGATCTTGCTAAGCTGTCTATGGAAGAGATCGATAAGTCGAAGCATACCAAAGACGATATCGATGTCAGACTCAAGTGGCTTGGGCTTTTCATCGTCGCAAGCATCATATGGGAGATTCATGATGAGGCTGAAGTTCCCAAATGGTGTAACACAAGCGAGCAGACACGGTACCTAACCAGCGTGATAAGGAATACCGGGAAAAAGGGTGTCCGGTTTTACTCCAAGCAAAACTTGGCAATAAAAAGGAGGGGGCCTTTCAAAATTGCCTGACATCCTAAAGGGGTTTGGCTTGGGTGGCCTTCCACCCTCCAAAGGGGGATGGCCATTGTTTGTAACCCTTGGGGAAACCCCC 2 1 5' arm Mesembryanthemum_crystallinum mirnest 100 100 -22.8 ......((((.(((((((((((.((.((((((...))))))..)).)))))))))))))))...... (-22.8)