mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATCA GTAGTTGTGGTGGTGATCAGA CAGACATTAAAAGTAGTTGTGGTGGTGATCAGATCAGTTTTGAATCTACATCTTTTGATTCTACAAAGGAGGATTCAAATTCATCAAACTGCAGTTTTTCATCATCATCATCATCATCAGATTTTATG GAGCTGACAATTGAAGGCAAGAAAAACAACAAAAAAACAATACATGGGCAAAGCTGCAAAGAGGAGTTCTCAACCATTTCCAGCATCACAGGAAGTAATTGAAGCAAACAGTTTTATTAGTCTGCAGAGTTCTTGGAAGATGACAGACATTAAAAGTAGTTGTGGTGGTGATCAGATCAGTTTTGAATCTACATCTTTTGATTCTACAAAGGAGGATTCAAATTCATCAAACTGCAGTTTTTCATCATCATCATCATCATCAGATTTTATGGAGGATGCTTCTTCATCTTCTTCATCATCATCTTCAAATGGTCCTCTGTACCAGTTATCTGACCTCATGGCTCAACTCCCCATCAAAAGAGGTCTCTCAAAGTTCTATCAAGGAAAGTCCCAATCTTTTACAAAACTAGCAAGTGTGGGGAGCTTGGAAGATCTTGCAAAGAGAGAGAATCCTTACAGGAAGAGGATCAAGTTGTGCAAGAGCTTTTGTGGAGGTTTTGATGGCCAGAGAATTTGCAGCCCAAAAGCAACCATATCAAAGAAGGGTTCTTCAAGATCTAAAACTCTAGGGAGAAATTGTGGTAGTAGTAATTTCTTGGTTACTTGTAGGCCTCCTGTTCCTGT 5 0 3' arm Mesembryanthemum_crystallinum mirnest 100 100 -26.3 ............((.((.(((((((((((.(((.(((((((((((((...(((((((......))))))))))))))........)))))).....))).))))))))))).)).))........... (-26.3)