mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAAGTGTTTGGGGGAACTC GTTTCCTCAATCGCTTCATT TCATCGAAACAAGTCATCAGGTTTCCCCTGGAGTTTCCTCAATCGCTTCATTGAGTCGGTTTTTTTATTTTTTTAAATAATAAAAATACTCACTGAAGTGTTTGGGGGAACTCCCGGAGATTTCCTGATACATATATATATA ATTCATCGAAACAAGTCATCAGGTTTCCCCTGGAGTTTCCTCAATCGCTTCATTGAGTCGGTTTTTTTATTTTTTTAAATAATAAAAATACTCACTGAAGTGTTTGGGGGAACTCCCGGAGATTTCCTGATACATATATATATAATAATAATAATACATAAAGAATTCAGTTTTCGAATAAAAAAAATCAATTCATCAGATTTTTTCTACTGGAGTTGCCCTCGATCGCTTCATTGAGTGTTTTATGTTCTATAAAAACGAACGACATTCAATGAAGTGTTTGGGGGAACTCCTGTGGTAAACCTGATTATCATGTCATTAAGCCTCTAACTGAACCAGGCTGGCTACAGTATTACCACTAGAGTTTTATGACAACCGTCCTGCTATGACTATTACCAATATTGCCTCTTGAAGAGGATAAAGATCTGTCGATATCGAGTCCTTCTCCGCCATTACCTTGAACCAGCACTCGAACTCTCGGCGAAAGACTCGATTTTCCATTAGCCGAAGTTGGCAAAGAAAAACGCCTGGTCAAACCTTTTTTATCAACTGCATCTTGACCGAATCTCGGCGAAACATTCACTCTCACCTTAGCCTTGGAAGAAGCAGTTCTTGCCATATAACTCGGCACCCTTGTACCACTCTCAAGCATTACATCACAATCTTCATGTTCGTATGGTAATGAAGTTCTCCGGCTCGATTTATAGTTCTCGACGCTGACCTGGCAATCCTTGTCTGAGGAAGAAAATCGAATTCAGCCTGATTGGATATTTCTCACTGGATTTTTCGGATTTCTTA 1 0 3' arm Mimulus_guttatus mirnest mir-395 1.0E-7 ath-MIR395a 7.0E-9 -50.7 ............((.((((((..((.((.(((((((((((((.(((((((.(((((...((((.((((((....)))))).))))..))))).))))))).))))))))))))).)).))...))))))))........... (-50.7)