mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATTGAGTGCAGCGTTGATGA ACCAACGCTGCATTCAATAA TAAAAAACCTCATTGAGTGCAGCGTTGATGATATCTTCGTTCGTTCTTTTCCGATGGTTTCATCATCTACAAATGTCGTTTCACCAACGCTGCATTCAATAATGCTTTTA GCTTCCACGTGACAAGAGTTGAATTTACAATATACAGAAAAAATGTCAAGTGGTGCGTACTACACACACAATTTCAGTACAACCAGTGAAGCTGTGTTTTAACTTTTAACTATAAGAAGCAAAAATAGTACAATGTTATTACAACCTGATGTGTACTTTGTGATAGCCCTATATTAACAAATCATAAACCAACATTTTCGGGAACTGAAACCGGTAGGGAAAAAAGGTGGGAGGAGAAGATTTGAGGTTAGAGCTTAAAAAACCTCATTGAGTGCAGCGTTGATGATATCTTCGTTCGTTCTTTTCCGATGGTTTCATCATCTACAAATGTCGTTTCACCAACGCTGCATTCAATAATGCTTTTAATTCTTCGAAGCATTAGAAAGATCGAAAAAGCAAATTCTAGGTACGTTTCTTCAATTCTCACTCATCGGGTTTTTCGCCTGTGCATTTTCACATGAATGTATTTTCGAATACATTGTAACTATCTGAGCAGTAAATGTTTCAGATTTATTGTTTTATATAATAACTGAAGAATATGAGGGGGGCACCTTATGGGGCCATGACTCCTTCGATTGTATAGAAGAGAGAATCCACCCAATCGGCTTTGAAAAGCAATTTTTGCAACGTTTGCATCGCGTCGTACTCTGGGTCAAGCTTCCGCTGCCATCCCTCCAACACCATGGTAGTTACGATGACAGTGCAAATATTGCCATCATATTGACTCTGTGGCGCCTGACTTGTCCGAGCATTTGTTGCATGCAATCAGCCGGGTGGAAATAAA 1 0 5' arm Mimulus_guttatus mirnest MIR397 0.00002 csi-MIR397 0.00000009 -31.7 ...........((((((((((((((((.(((.((...((((.((........((((((...)))))).)).))))..)).))).)))))))))))))))).......... (-31.7)