mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCTTCATCATCTTCGTCA ATGAAGAGGAAGAAGAAAAGATC CTTCTTCATCTTCATCTTCATCATCTTCGTCACGCGGCACGATGAGCCAGTATGCATCGGCGGCGAGCCTTCGAGATCTGTATAACAGCAGCGACGATGAAGAGGAAGAAGAAAAGATCCAGATGAG CATAAGCTTCTCTCCCTACCTCTACCCTGCTATTTGCAGGTAGAGGCTTCCGCAGAAAAACGCAATACACACACTTTACTGTGTGTAACGGAAAAGAGAAATATACGTACAATTTTGTAAAAATAATGACGGAATCCATGCCGGAAAATGACGTCAATGTAGGTGAATTGGATGCACATGTTGCCTCTGACAAGACATCAGTCGCCGCCGATTATGGCAAGCCGCCGCTGGTCAACGCGGAGAAAAAGAAGAAAAAGAGCGGAGCCTTCGGCATTTTCCGGGCGGCACTGCTAATGCTGCGTAAACGGCCGGGAGAGAAAAAAGCGGCGAAGAAAACGGTATCCAAACAGAAAAGTACGGCTTCTAACGGCAGTTGGGCGAAGCTAGTTGGATCTATGCGCCCCTTGAGCGGCCTGCAGGAATCCCCTGCGTCGCCGCCGCATCAGCCATCGCCCGCCGCCGCCGAAGATGGGGAAACAAACCCCCCGCAGAAGCAGGCGTCGGCCGTCGCCGACGAAGGCGCAATTAAGGATGAGGAAACGACTCCGGCGCAGAAATCGGCGTCGGCGTCGCCGGATCCTGCAGAAATCAGCAGAGAGGAAACAATATCGGCGGCATCTTCTTCATCTTCATCTTCATCATCTTCGTCACGCGGCACGATGAGCCAGTATGCATCGGCGGCGAGCCTTCGAGATCTGTATAACAGCAGCGACGATGAAGAGGAAGAAGAAAAGATCCAGATGAGTGTTCGACGCATAACAGGAGATGAAATGATTGA 4 2 5' arm Mimulus_guttatus mirnest mir-598 0.0001 100 -35.7 .....((((((((.(((((.((.((((((((.(((.((.(((((..........))))))).))).....(((....((((...))))...))).)))))))).)).)))))...))...)))))). (-35.7)